BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1918.p
         (251 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095073|ref|YP_001100148.1| hypothetical protein HEAR1873 [...   247   5e-67

>gi|134095073|ref|YP_001100148.1| hypothetical protein HEAR1873
           [Herminiimonas arsenicoxydans]
          Length = 251

 Score =  247 bits (630), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 116/250 (46%), Positives = 181/250 (72%), Gaps = 2/250 (0%)

Query: 1   MANHDEIDDDSPYRVHSRREIIALLTSMMEKNQLLSLLIKGGSESVITSILEVDTDDDSL 60
           +A+  E DD +PYRV+SRRE+IALL S+ E+NQL+ +LI  G+++++TSIL++D   +++
Sbjct: 3   LASEYENDDLNPYRVNSRREVIALLRSIGERNQLVRMLINHGNDTIVTSILQIDETANTV 62

Query: 61  IIDAAPSAMLNDSIVSSKHIHFEALYNSIRITFAADGARQVEYQNRPALKVEIPASLVRL 120
           ++D AP+A++N  +++S+ + FE +  +IRI F +  A+   Y+N PA  + +P S++RL
Sbjct: 63  LLDCAPTAIMNQRVLNSEKLSFETVLENIRILFNSPAAQSCIYENLPAFIIPLPTSVIRL 122

Query: 121 QRREFFRIPTPIAKPLRCTFRITQPDGSFITVVTLLNNISAGGVGITDEKKLLATTPGIV 180
           QRREF+R+ TP+  P+ CT  +   D   I VV  L+NIS GG+ + DEKKL+ +TPG +
Sbjct: 123 QRREFYRVSTPVTNPVYCTIPVKTED-QIIPVVVPLHNISGGGLSVVDEKKLIDSTPGRI 181

Query: 181 YEDCQLELGDNTLVSVKLQVRDCKEFKMTNGKVVNRFGCQFVDIPRTVLAAIQRFITKLE 240
           YE+C+L+L    +V++ LQVR+  E  +TNGK ++R GC FVD     LAA+Q++ITKLE
Sbjct: 182 YENCRLDLPGG-VVTLALQVRNQLEVTLTNGKSIHRLGCAFVDPSNGALAAVQKYITKLE 240

Query: 241 REQNAKASGM 250
           R+QNAKA+G+
Sbjct: 241 RDQNAKATGL 250


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.136    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 427,039
Number of extensions: 15701
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 172
Effective length of database: 740,042
Effective search space: 127287224
Effective search space used: 127287224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)