BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1916.p
         (569 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095076|ref|YP_001100151.1| flagellar MS-ring protein [Herm...   621   e-179

>gi|134095076|ref|YP_001100151.1| flagellar MS-ring protein
           [Herminiimonas arsenicoxydans]
          Length = 545

 Score =  621 bits (1602), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 334/574 (58%), Positives = 414/574 (72%), Gaps = 49/574 (8%)

Query: 15  ARSPQGKRILLIIAAAATLALMAGIWLWSQKVEYRVLFSNFNDRDGGAIVAALQQMNVPY 74
           A+SP G++ LL++  AA +A+M G+ LW QK EYRVLFSNF+DRDGGAI+ +LQ  NVPY
Sbjct: 2   AKSPNGRKFLLMVGVAAVIAVMIGLVLWGQKPEYRVLFSNFSDRDGGAIMTSLQAANVPY 61

Query: 75  KYSESGMAILVPENMVHDARLKLAAQGLPKGGNVGFELMENQKLGISQFLEQVNFQRALE 134
           K++E G AILVP + VH+ RLKLAA+GLPKGG+VGFELMENQKLG+SQFLEQVNFQRALE
Sbjct: 62  KFAEGGGAILVPADKVHEIRLKLAAEGLPKGGSVGFELMENQKLGVSQFLEQVNFQRALE 121

Query: 135 GELARSVQSLSSVQTARVHLALPKASVFVRDQQKPTASVILSLYPGRYLDPQQVSAIVHL 194
           GELARS+QS+ +VQ ARVHLALPKASVFVRDQQKPTASV+L+L+ GR+LD QQVSAIVHL
Sbjct: 122 GELARSIQSVGAVQAARVHLALPKASVFVRDQQKPTASVLLNLHAGRFLDQQQVSAIVHL 181

Query: 195 VASSVPELSPKAVTIVDQNGNLLSDTTKQGQPNTLDPTQLKYVQDMQQDIVKRVESIIAP 254
           VASSVPELSPK VTIVDQ GNLLS+  K    NTLDP+QLKYVQ++QQ+I KR+ESII P
Sbjct: 182 VASSVPELSPKNVTIVDQAGNLLSENNKPAGTNTLDPSQLKYVQELQQNIAKRIESIITP 241

Query: 255 IVGNGNVRAEATADVDFSRSEQASEAYKPNQTKDSAAVRSKQSSEANSATSGTSGVPGAL 314
           IVG  NVRAEATADVDFS SEQA+E YKPNQ   SA VRS+Q+SE+ + ++  +GVPGAL
Sbjct: 242 IVGLNNVRAEATADVDFSTSEQAAEIYKPNQVPSSATVRSQQTSESTNGSNNATGVPGAL 301

Query: 315 TNQPPAPATAQI-VNPAAANGAANQNGAATPNGAAPTPAASGNS--RKDETINYEVDKTV 371
           TNQP   ATA +   P             TP   A T  A   +  ++D T NYEVDKT+
Sbjct: 302 TNQPAPAATAPLNTTPQTTAAPGTPGAPGTPGAPAATATAPQATPIQRDTTTNYEVDKTI 361

Query: 372 RYTQQPMGGVRRLTVAVVVNYKRTLDNTGKIVMRPLTEAERNQITDLVKEAMGYNKDRGD 431
           RY QQPMGG++RL+VAVVVNYKR +   GK+   PLTE E+ QITDLV+EAMGYNKDRGD
Sbjct: 362 RYVQQPMGGLKRLSVAVVVNYKRVVGKDGKVSFLPLTEIEKTQITDLVREAMGYNKDRGD 421

Query: 432 SLNVVNTQFS---TDMEPEVPLWKQPGMIDLAKEIGKYILVAAVLLFLYFRVLRPIVWKL 488
           +LNVVN+ F+    +  P++PLW++P  ID+  +  KY+L+  VLL LYF+VL+P++ KL
Sbjct: 422 TLNVVNSPFAGSNKEEAPKLPLWERPEAIDMGMQGAKYLLLGIVLLILYFKVLKPLLNKL 481

Query: 489 SGREERERLAKEKAEAEAAAAAAAVAAGFDPDDPDAIVNLSGEPA-----VDERA----- 538
           +                                P A+ + SG+P      ++E       
Sbjct: 482 N------------------------------PPPLALTDESGQPVGMAQELEEEVGPMGI 511

Query: 539 ---QYKANLETAKQWAKNDPKLVASIIKSWVNNE 569
               Y+ NLE AK+ A+ DPK+VA+I+K+WV NE
Sbjct: 512 HMHSYQQNLEAAKELARQDPKVVANIVKAWVGNE 545


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.312    0.128    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 910,525
Number of extensions: 31750
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 482
Effective length of database: 713,682
Effective search space: 343994724
Effective search space used: 343994724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 131 (55.1 bits)