BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1915.p
         (331 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095077|ref|YP_001100152.1| motor switch protein [Herminiim...   531   e-152

>gi|134095077|ref|YP_001100152.1| motor switch protein
           [Herminiimonas arsenicoxydans]
          Length = 331

 Score =  531 bits (1367), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 259/331 (78%), Positives = 292/331 (88%)

Query: 1   MSNDGVQKGAILMLALGEDEAAEVMKYLGPKEVQKLGAAMSALRNVSFEEINEVLEAFVA 60
           MS+ G+ KGA+LMLALG DEAAEVMKYLGP+EVQKLGAAMS ++ +  EE+  VL  F A
Sbjct: 1   MSDKGIHKGAVLMLALGADEAAEVMKYLGPREVQKLGAAMSTMKAIQSEELVSVLSEFRA 60

Query: 61  ETGQASSLGLDSDEYIRSVLTKALGDDKATSLLNRILGGRDASGIESLKWMDAQSVAELI 120
           ET + +SLGLDSD+YIR VLTKALGDDKA SLLNRILG RDASGIESLKWMDAQSVA+L+
Sbjct: 61  ETEKNTSLGLDSDDYIRDVLTKALGDDKAASLLNRILGARDASGIESLKWMDAQSVADLV 120

Query: 121 RNEHPQIIATILVHLERDHACGIINNFTERLRNDVILRIATLDGVQPAALRELNDVLTKL 180
           RNEHPQIIATILVHLERD AC ++ +FTERLRND +LRIATLDGVQPAALRELN+VLTKL
Sbjct: 121 RNEHPQIIATILVHLERDQACEVLEHFTERLRNDCVLRIATLDGVQPAALRELNEVLTKL 180

Query: 181 LTGNESLKKQQMGGIRTAAEILNFMSGENETSVMNNLRSYDEDMAQKIMDEMFVFENIID 240
           LTGNE+LKK+ MGGIR AAEILNF +GENE SVM NL+ YD DMAQKIMDEMFVF+NI+D
Sbjct: 181 LTGNENLKKKPMGGIRAAAEILNFFNGENEVSVMANLKGYDNDMAQKIMDEMFVFDNIMD 240

Query: 241 IDGRGIQLLLREVQSESLIVALKGASQGLRDKIFANMSQRAAEMMKEDLESKGPVRLSEV 300
           I+ RGIQLLLREVQSESLI+ALKGA+  LR+K F NMSQRA EMM+EDLESKGPVRLSEV
Sbjct: 241 IEDRGIQLLLREVQSESLIIALKGATPDLREKFFKNMSQRAGEMMREDLESKGPVRLSEV 300

Query: 301 DAQQKAILQIVRRLADEGQIVLGAKGEDAFI 331
           +A QK ILQIVRRLADEGQ+ LG K EDA++
Sbjct: 301 EANQKEILQIVRRLADEGQLTLGGKAEDAYV 331


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.133    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 542,734
Number of extensions: 20745
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 249
Effective length of database: 730,157
Effective search space: 181809093
Effective search space used: 181809093
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)