BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1914.p
         (233 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095078|ref|YP_001100153.1| putative FliH [Herminiimonas ar...   205   2e-54

>gi|134095078|ref|YP_001100153.1| putative FliH [Herminiimonas
           arsenicoxydans]
          Length = 233

 Score =  205 bits (521), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 110/239 (46%), Positives = 143/239 (59%), Gaps = 15/239 (6%)

Query: 1   MRAKIIPKEEMTPYQRWELASFNEEPEPEPEPEP-------IEEEFLEEPPPVPQLTAEQ 53
           + + +IPKE+ + YQRWE+ SF EEP       P                       A+Q
Sbjct: 2   LMSDVIPKEKQSAYQRWEMTSFGEEPAGGKASTPDTAASIAAANAAASAQMANIAAMAQQ 61

Query: 54  LDAIREAARQEGFAEGREHGQQIGRSEGYMAGLQQGQQEINEVIQHFRQIAVNFSTEVSQ 113
           ++  R  A  EG+A G E        EG  AGL +G+ +  +     RQIA  F TEV+Q
Sbjct: 62  IEDARAQAHAEGYAAGLE--------EGRAAGLAEGRAQAEQERLSLRQIAETFGTEVAQ 113

Query: 114 CSEKMAPELLDLALDLAKSMLKTALNVRPELILPTVSAAIHALPVLQLPASLTLHPEDAA 173
            +E +A ++LDL+LDLAK+MLKTALNVRPELI+P V  AIH LP LQ P  L LHP+DAA
Sbjct: 114 ANELIANDMLDLSLDLAKAMLKTALNVRPELIIPLVREAIHYLPTLQQPTLLHLHPDDAA 173

Query: 174 LVHKHLGEELGKQGWKINEDAQLERGGCRVETRTNQIDATTQTRWQRLGESLSKQLDWL 232
           +V  H+ +EL   GW++ ED  + RGGCRVE  +NQIDA+  TRWQR+  SL K+ DWL
Sbjct: 174 IVAVHMNDELSAVGWRVVEDTHMGRGGCRVEAVSNQIDASAPTRWQRIAASLGKESDWL 232


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.313    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 360,482
Number of extensions: 11795
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 154
Effective length of database: 740,042
Effective search space: 113966468
Effective search space used: 113966468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 127 (53.5 bits)