BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1913.p (468 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095079|ref|YP_001100154.1| flagellum-specific ATP synthase... 706 0.0 gi|134096552|ref|YP_001101627.1| F0F1 ATP synthase subunit beta ... 168 5e-43 gi|134096554|ref|YP_001101629.1| F0F1 ATP synthase subunit alpha... 130 1e-31 gi|134093951|ref|YP_001099026.1| transcription termination facto... 79 4e-16 >gi|134095079|ref|YP_001100154.1| flagellum-specific ATP synthase [Herminiimonas arsenicoxydans] Length = 426 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/425 (83%), Positives = 384/425 (90%) Query: 43 MEAVGLKLPVGSPCNVPLPNGMMIEAEVVGFQDERLFLMPQSDVEGIVPGTRVYPVEPVR 102 MEAVGLKL VGS C +PL NG IEAEVVGF+D+RLFLMPQSDVEGIVPGTRV+PVE V+ Sbjct: 1 MEAVGLKLAVGSACTIPLANGARIEAEVVGFEDDRLFLMPQSDVEGIVPGTRVFPVEVVQ 60 Query: 103 PPPRTGPISFTPRRADEHSRRLPVGDELLGRVLDGAGRPLDNLGPLHTERSAPLAVRAAN 162 P+ G +S RR + +R LPVG ELLGRVLDGAGRPLD+LGPLH S PL VRAAN Sbjct: 61 SLPKPGAVSHPRRRPSDRTRHLPVGMELLGRVLDGAGRPLDSLGPLHATHSGPLNVRAAN 120 Query: 163 PLGRAPIRDILDTGIRAINSMLTVGRGQRMGLFAGSGVGKSVLLGMMARYTSADVIVVGL 222 PL RAPI D+LD G+RAINSMLTVGRGQRMGLFAGSGVGKSVLLGMMARYT+ADVIVVGL Sbjct: 121 PLTRAPITDVLDVGVRAINSMLTVGRGQRMGLFAGSGVGKSVLLGMMARYTTADVIVVGL 180 Query: 223 IGERGREVKEFIEQILGAEGLARSVVVAAPADTPPLMRLQGAAYCTSIAEYFRDQGKDVL 282 IGERGREVKEFIEQILG EGLARSVVVAAPADTPPLMRLQGAAY T+IAE+FRD+GKDVL Sbjct: 181 IGERGREVKEFIEQILGPEGLARSVVVAAPADTPPLMRLQGAAYTTAIAEHFRDEGKDVL 240 Query: 283 LIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGDEGGGSITAFYTV 342 LIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNG EGGGSITAFYTV Sbjct: 241 LIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGKEGGGSITAFYTV 300 Query: 343 LTEGDDQQDPIADAARAILDGHIVLNRQLAEAGHYPAIDIEQSISRAMHSITDADHQRRS 402 LTEGDDQQDPIADAARAILDGHIVLNR LAEAGHYPAIDIEQSISRAMH+IT +HQ+++ Sbjct: 301 LTEGDDQQDPIADAARAILDGHIVLNRSLAEAGHYPAIDIEQSISRAMHNITTPEHQKQT 360 Query: 403 RHLKQLYSRFQRNRDLISVGAYAAGSDPILDEAIALLPRMEAFLQQGIHEQSDVSESLGQ 462 R LKQL SR+QRNRDLISVGAY+AGSDP+LDEAIAL ++E+FLQQ I E+S ++ESLGQ Sbjct: 361 RKLKQLTSRYQRNRDLISVGAYSAGSDPVLDEAIALNTKIESFLQQDITERSGINESLGQ 420 Query: 463 LTALF 467 L +LF Sbjct: 421 LASLF 425 >gi|134096552|ref|YP_001101627.1| F0F1 ATP synthase subunit beta [Herminiimonas arsenicoxydans] Length = 466 Score = 168 bits (426), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 113/343 (32%), Positives = 183/343 (53%), Gaps = 22/343 (6%) Query: 124 LPVGDELLGRVLDGAGRPLDNLGPLHTERSAPLAVRAANPLGRAPIRDILDTGIRAINSM 183 +PVG LGR++D G P+D GP+ ER+A + +A +P +D+L+TGI+ I+ + Sbjct: 76 VPVGKATLGRIMDVLGNPIDECGPVSHERTASIHRKAPAYDELSPSQDLLETGIKVIDLV 135 Query: 184 LTVGRGQRMGLFAGSGVGKSV----LLGMMARYTSADVIVVGLIGERGREVKEFIEQILG 239 +G ++GLF G+GVGK+V L+ +A+ S + G +GER RE +F ++ Sbjct: 136 CPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAG-VGERTREGNDFYHEMAD 194 Query: 240 AEGL-------ARSVVVAAPADTPPLMRLQGAAYCTSIAEYFRDQGKDVLLIMDSLTRYA 292 A+ + ++ +V + PP RL+ A ++AE FRD+GKDVL +D++ R+ Sbjct: 195 AKVVDLENPENSKVAMVYGQMNEPPGNRLRVALTGLTMAEAFRDEGKDVLFFVDNIYRFT 254 Query: 293 MAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGDEGGGSITAFYTVLTEGDDQQDP 352 +A E++ +G P+ GY P++ ++ L ER + GSIT+ V DD DP Sbjct: 255 LAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKT--GSITSIQAVYVPADDLTDP 312 Query: 353 IADAARAILDGHIVLNRQLAEAGHYPAIDIEQSISRAMHS-ITDADHQRRSRHLKQLYSR 411 A LD +VL+R +A G YPA+D S SR + + DH +R ++ R Sbjct: 313 SPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDPLVVGQDHYDTARAVQGTLQR 372 Query: 412 FQRNRDLISVGAYAAGSDPILDEAIALLPR---MEAFLQQGIH 451 ++ RD+I++ G D + E L+ R M+ FL Q H Sbjct: 373 YKELRDIIAI----LGMDELAPEDKLLVARARKMQRFLSQPFH 411 >gi|134096554|ref|YP_001101629.1| F0F1 ATP synthase subunit alpha [Herminiimonas arsenicoxydans] Length = 511 Score = 130 bits (327), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/280 (30%), Positives = 145/280 (51%), Gaps = 15/280 (5%) Query: 124 LPVGDELLGRVLDGAGRPLDNLGPLHTERSAPLAVRAANPLGRAPIRDILDTGIRAINSM 183 +P+G EL GRV++ G+P+D GP++ + +AP+ A + R + + TGI+AI++M Sbjct: 97 VPIGPELRGRVVNALGQPIDGKGPVNAKLTAPIEKIAPGVIARQSVDQPMQTGIKAIDAM 156 Query: 184 LTVGRGQRMGLFAGSGVGKS-VLLGMMARYTSADVIVVGL-IGERGREVKEFIEQILGAE 241 + +GRGQR + GK+ V + + +V + + IG++ VK + + Sbjct: 157 VPIGRGQRELIIGDRQTGKTAVAIDAIINQKGQNVTCIYVAIGQKASSVKNIVRSLEQHG 216 Query: 242 GLARSVVVAAPADTPPLMRLQGAAYCTSIAEYFRDQGKDVLLIMDSLTRYAMAQREIALA 301 + ++VVAA A M+ A ++ EYFRD+G+D L++ D L++ A+A R+++L Sbjct: 217 AMEYTIVVAATASESAAMQFVSAYSGCAMGEYFRDRGEDALIVYDDLSKQAVAYRQVSLL 276 Query: 302 IGEPPATKGYPPSVFAKLPALVERAG-----------NGDEGG--GSITAFYTVLTEGDD 348 + PP + +P VF L+ERA G+ G GS+TA + T+ D Sbjct: 277 LRRPPGREAFPGDVFYLHSRLLERAARVNADYVEAFTKGEVKGKTGSLTALPIIETQAGD 336 Query: 349 QQDPIADAARAILDGHIVLNRQLAEAGHYPAIDIEQSISR 388 + +I DG I L L +G PAI+ S+SR Sbjct: 337 VSAFVPTNVISITDGQIFLETSLFNSGIRPAINAGISVSR 376 >gi|134093951|ref|YP_001099026.1| transcription termination factor Rho [Herminiimonas arsenicoxydans] Length = 421 Score = 79.3 bits (194), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 83/272 (30%), Positives = 126/272 (46%), Gaps = 23/272 (8%) Query: 142 LDNLGPLHTERSAPLAVRAANPLGRAPIRDILDTGIRAINSMLTVGRGQRMGLFAGSGVG 201 +NL PLH + PL + + G I TG R I+ + +G+GQR L A G Sbjct: 133 FENLTPLHPNK--PLLLER-DMRGEENI-----TG-RVIDLIAPIGKGQRGLLVASPKSG 183 Query: 202 KSVLLGMMARYTSAD----VIVVGLIGERGREVKEFIEQILGAEGLARSVVVAAPADTPP 257 KSV+L +A + + V++V LI ER EV E + G VVA+ D P Sbjct: 184 KSVILQHIAHAITTNHPDVVMIVLLIDERPEEVTEMQRSVRGE-------VVASTFDEPA 236 Query: 258 LMRLQGAAYCTSIAEYFRDQGKDVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFA 317 +Q A A+ + KDV++++DS+TR A A + A G+ T G + Sbjct: 237 TRHVQVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGK-VLTGGVDANALQ 295 Query: 318 KLPALVERAGNGDEGGGSITAFYTVLTE-GDDQQDPIADAARAILDGHIVLNRQLAEAGH 376 + P A E GGS+T T L E G D I + + + + L R+LAE Sbjct: 296 R-PKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRV 354 Query: 377 YPAIDIEQSISRAMHSITDADHQRRSRHLKQL 408 YPAI++ +S +R + D ++ L++L Sbjct: 355 YPAINLNKSGTRREELLIKPDQLQKIWVLRKL 386 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 897,372 Number of extensions: 39430 Number of successful extensions: 157 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 151 Number of HSP's successfully gapped: 4 Length of query: 468 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 383 Effective length of database: 720,272 Effective search space: 275864176 Effective search space used: 275864176 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)