BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1911.p
         (428 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095081|ref|YP_001100156.1| flagellar hook-length control p...   146   2e-36

>gi|134095081|ref|YP_001100156.1| flagellar hook-length control
           protein [Herminiimonas arsenicoxydans]
          Length = 392

 Score =  146 bits (368), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 79/151 (52%), Positives = 100/151 (66%), Gaps = 5/151 (3%)

Query: 278 AYSDKIQANVGSAGWNQALGSKITWMASAGMQSASLSLNPPDLGPMQVVLNVHNQQADAT 337
           A S K+   VGS GW+QALG K+ WM     Q+A+L+LNPPDLGPMQV LNV N QA A 
Sbjct: 247 AQSAKLAPQVGSPGWDQALGQKVVWMIQGAQQTATLTLNPPDLGPMQVTLNVSNNQATAN 306

Query: 338 FITAQPEVKQALEAAMPKLREMMDQAGIQLGQANVQTGMPNQQQGAGNGQPQARNSSSGN 397
           F   QPEV+QALEAAMP+LREM++ AGIQLGQ++V  G PNQQQ +G  Q   R +S   
Sbjct: 307 FTAHQPEVRQALEAAMPRLREMLNDAGIQLGQSSVSAGSPNQQQTSGEQQQGGRQAS--- 363

Query: 398 FGKDQDGDAAITGTTSASASTSGLGLVDTFA 428
             ++ +    +   +     +SG G+VDTFA
Sbjct: 364 --RNDNAVEPVIHVSHVPLPSSGSGMVDTFA 392


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.305    0.118    0.316 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 578,221
Number of extensions: 20326
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 344
Effective length of database: 723,567
Effective search space: 248907048
Effective search space used: 248907048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 130 (54.7 bits)