BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1909.p
         (334 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095084|ref|YP_001100159.1| flagellar motor switch protein ...   527   e-151

>gi|134095084|ref|YP_001100159.1| flagellar motor switch protein
           FliM [Herminiimonas arsenicoxydans]
          Length = 332

 Score =  527 bits (1358), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 245/327 (74%), Positives = 287/327 (87%), Gaps = 1/327 (0%)

Query: 1   MAEHFLSQEEVDALLKGVTGDEDEEKIVEEAPGTVRTYNLATQERIVRGRMPTLEIINER 60
           MA++FLSQEEVDALLKGV GD+DE    E++ G VR YNLATQERIVRGRMPTLEIINER
Sbjct: 1   MADNFLSQEEVDALLKGVNGDQDEAGKPEDSTG-VRPYNLATQERIVRGRMPTLEIINER 59

Query: 61  FARLFRIGLFNFIHRTAEISVGPVKVSKYSEFIRNLVVPTNLNLVHIKPFRGIGLVVFDP 120
           F+RL RIGLFNF+HR+AE+S+GPV+VSKYSEFIRNLVVPTNLNL+H+KP RGIGL+V DP
Sbjct: 60  FSRLLRIGLFNFLHRSAEVSIGPVRVSKYSEFIRNLVVPTNLNLIHMKPLRGIGLIVLDP 119

Query: 121 QFVFMLVDNMFGGDGRFHTRIEGREFTPTEQRIIMRVLEITFETYAKSWEPIYPIEFEFI 180
             VF+LVDN+FGGDGRFHTR+EGR+FT TEQRII R+L I FETYAKSWEP+YP+EFE+I
Sbjct: 120 NLVFLLVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRILGIIFETYAKSWEPVYPVEFEYI 179

Query: 181 RSEMNTQFANIATPNEVVVSTTFTVELGPVSGEIHICTPYSMIEPVRDRLTSSMQGEALE 240
           RSEMNTQFANIATPNEVVV+TTFT+ELGPVSG++H C PYSMIEP+RD LTSSMQGE LE
Sbjct: 180 RSEMNTQFANIATPNEVVVATTFTIELGPVSGDLHFCVPYSMIEPIRDLLTSSMQGETLE 239

Query: 241 VDKRWIRLMKQQIQTAEVELIVNFGTARVNFTDLLHMQVGDVIPLQTNTTVEAQVDGVPV 300
           +DKRWIRLM QQIQTAEVE++ N G+A+V   D+L+M++GD+I +     V A+VDGVPV
Sbjct: 240 MDKRWIRLMTQQIQTAEVEILANMGSAKVTLGDILNMKIGDIISIAVPEQVTAEVDGVPV 299

Query: 301 MECSYGQSNGQYALRVEKLLSITHQET 327
           MECSYG+ NGQYALRVEKL+   +  T
Sbjct: 300 MECSYGKLNGQYALRVEKLIYSANDTT 326


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 602,681
Number of extensions: 23479
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 252
Effective length of database: 730,157
Effective search space: 183999564
Effective search space used: 183999564
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)