BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1908.p
         (151 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095085|ref|YP_001100160.1| motor switch protein [Herminiim...   196   4e-52

>gi|134095085|ref|YP_001100160.1| motor switch protein
           [Herminiimonas arsenicoxydans]
          Length = 141

 Score =  196 bits (498), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 111/151 (73%), Positives = 120/151 (79%), Gaps = 10/151 (6%)

Query: 1   MADENVAGAGAAEDDPWGAAMAEQTQAEEAQKKGEMEDEKGISAAPAMATVFKDLSAADI 60
           M++EN +   A  +D WGAAMAEQ Q E             ++   A ATVFKD S  D+
Sbjct: 1   MSEENASQTTA--EDGWGAAMAEQEQTEAEAAA--------MAPKAASATVFKDFSGGDL 50

Query: 61  KTNTPNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLI 120
           KT T NDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDG+AGEPMDVLVNGCLI
Sbjct: 51  KTGTHNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLI 110

Query: 121 AQGEVVVVNDKFGIRLTDIITPAERIRKLNR 151
           AQGEVVVVNDKFGIRLTDIITP+ERIRKLNR
Sbjct: 111 AQGEVVVVNDKFGIRLTDIITPSERIRKLNR 141


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.132    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 248,886
Number of extensions: 8962
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 1,000,347
Length adjustment: 74
Effective length of query: 77
Effective length of database: 756,517
Effective search space: 58251809
Effective search space used: 58251809
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 124 (52.4 bits)