BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1907.p
         (178 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095086|ref|YP_001100161.1| putative FliO (partial) [Hermin...    96   8e-22

>gi|134095086|ref|YP_001100161.1| putative FliO (partial)
           [Herminiimonas arsenicoxydans]
          Length = 147

 Score = 96.3 bits (238), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 49/94 (52%), Positives = 67/94 (71%), Gaps = 6/94 (6%)

Query: 71  MAGVAWLFKRFGLTQNFNGNAAA--KVVGGVSVGTRERVMVIEVGEQWIVVGVAPGRVNA 128
           MA  AW+ +RF       G++AA  K++GGVSVG RERV+V+E+ +QWIVVGVAPGRVNA
Sbjct: 56  MAAAAWMLRRF---TGAKGSSAANIKIIGGVSVGNRERVVVVEIADQWIVVGVAPGRVNA 112

Query: 129 LATLPRQELAAGQSGQGSGPSFANWLKHTMDKRN 162
           L+T+PRQE         +  +F++WL  T++KRN
Sbjct: 113 LSTMPRQETPVITDAPPAK-NFSSWLAQTIEKRN 145


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.129    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 120,406
Number of extensions: 2613
Number of successful extensions: 9
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 102
Effective length of database: 749,927
Effective search space: 76492554
Effective search space used: 76492554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)