BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1904.p
         (267 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095089|ref|YP_001100164.1| flagellar biosynthetic protein ...   230   7e-62

>gi|134095089|ref|YP_001100164.1| flagellar biosynthetic protein
           fliR [Herminiimonas arsenicoxydans]
          Length = 222

 Score =  230 bits (586), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 126/209 (60%), Positives = 163/209 (77%)

Query: 42  VKVLLGIAIGAVLAPDVPVPPAIDPMSMTGLLILLQQLLIGLSMGFAMRVVFAAVEAAGE 101
           +K+ LGI +  ++AP VP  PA+DPMS  GLLIL+QQLLIGL+MGFAMR+VFA VE AGE
Sbjct: 1   MKISLGIMLALIIAPTVPALPAMDPMSPAGLLILVQQLLIGLTMGFAMRIVFAGVEMAGE 60

Query: 102 LTSSTMGLSFAAFFDPQTQGRTAAISQVFSLLATMVFLSLNGHLMLLQVMAESFHTLPIT 161
           +T  TMGL FA+FFDPQT+ R++AISQ  +LL  M++LS N HL++L  +A+SF  LPI+
Sbjct: 61  ITGMTMGLGFASFFDPQTRARSSAISQFLALLILMIYLSTNLHLVVLSTLAQSFELLPIS 120

Query: 162 GVPVTTEGFHQLGLWGAKIFSMGVQLSLPLLIALLITNFALGILTRAAPQLNLFGIGFSI 221
              V+TEGF Q+  WG +IFS GVQLSLP++ ALL+TN ALGILTRAAPQLN+FGIGF I
Sbjct: 121 SNFVSTEGFFQVVKWGGRIFSAGVQLSLPMVAALLMTNIALGILTRAAPQLNIFGIGFPI 180

Query: 222 TMLAGFVLIAFTLPYMLTPLQRFLADGIE 250
           T+  GF++IA  LPY++ P    + +GI+
Sbjct: 181 TIGVGFIMIAIVLPYLMNPFINLMQEGID 209


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.328    0.141    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 407,559
Number of extensions: 13306
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 187
Effective length of database: 736,747
Effective search space: 137771689
Effective search space used: 137771689
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)