BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1903.p
         (377 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095090|ref|YP_001100165.1| putative flagellar hook-associa...   193   1e-50

>gi|134095090|ref|YP_001100165.1| putative flagellar hook-associated
           protein 3 [Herminiimonas arsenicoxydans]
          Length = 403

 Score =  193 bits (490), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 147/406 (36%), Positives = 218/406 (53%), Gaps = 34/406 (8%)

Query: 1   MRISTQMLYQSSNNDMTSMQSQILKLTQQVTAQQKVLLPSDDPVAAARALDMVQTSALND 60
           MRIST  +++  +  +  +Q+ +LK  QQ++  +++L PSDDPVAAA AL M Q  ++ND
Sbjct: 1   MRISTNTIFEMGSGKIGDLQAAMLKTQQQISTNRRILAPSDDPVAAAAALGMEQAISIND 60

Query: 61  QYKTNRQNANSALATVQGTLDSLTNMLTKLKSNVITAGNASYSNAERINMAAEIKGNLNE 120
           Q  TNR +A +AL+  +  L S+T +L  +K  VI+AGN +  + +R   A +++GN +E
Sbjct: 61  QLATNRLSAKAALSEEESILQSVTLLLQSVKDIVISAGNGALDDVQRQMFATQLRGNFDE 120

Query: 121 VMGYANAQDGQGNYIFAGFKSSTQPFTLDGTGGVVYNGDQGAMTLQVDSTRQMDISASGQ 180
           +MG AN +D  GNYIF GF+SS+ PF    T G  Y GDQG   LQV   RQ+    SG 
Sbjct: 121 LMGLANTRDSNGNYIFGGFQSSSPPFMQSAT-GADYTGDQGQRMLQVGPARQLASGDSGS 179

Query: 181 AIFQGN--GQDIFKTMTNLIN----VLSV-PVTEAANNADTAAANAFVYPAGSGQT---- 229
           A+F+G   G   F T   L N    ++S+  V++       A    F   A +G+T    
Sbjct: 180 AVFEGGVTGNGRFVTAAGLGNTGTGIVSMGSVSDLTQLTGLAYDVTFSVDAITGETTYLV 239

Query: 230 --PIAAYKTAQAAL--DAL-----------KP-DDPTYQAQ-FTATAALKLQSDAADAAR 272
             P  A  T Q  +  D +           KP D  T+  +  T  +     +D      
Sbjct: 240 NEPPPATPTPQLYVSGDPIEIGGMRFDIKGKPADGDTFSVKPSTNQSVFTTITDLLTTLS 299

Query: 273 TPVVG--SQAALSRSLAQFNTQIDSISSSVSTVKASIGARQNELDNLDAAGLVNNENYTQ 330
           T  VG   Q  L+  LA  NT I ++  ++STV+ S+GAR  E+DNLD+AG      YT+
Sbjct: 300 TSAVGPTGQTRLANGLASANTNIANVLDNISTVRTSVGARLKEIDNLDSAGADLKLQYTK 359

Query: 331 TINNLLGRNLSDTSELISDLTLKQTYLSAAQKVFVTTSGLTLLNYL 376
           T+++L  +++ D  E  S  T +Q  L AA++ F+  SGL+L N L
Sbjct: 360 TLSDL--QDI-DPVEAYSRFTQQQFTLEAARQSFIKISGLSLFNML 402


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.310    0.122    0.321 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 572,832
Number of extensions: 20685
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 294
Effective length of database: 726,862
Effective search space: 213697428
Effective search space used: 213697428
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 129 (54.3 bits)