BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1902.p
         (777 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095091|ref|YP_001100166.1| flagellar hook-associated prote...   387   e-109

>gi|134095091|ref|YP_001100166.1| flagellar hook-associated protein
           FlgK [Herminiimonas arsenicoxydans]
          Length = 659

 Score =  387 bits (995), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 236/559 (42%), Positives = 330/559 (59%), Gaps = 29/559 (5%)

Query: 3   TNIFSIGQSALQAAMAAQATTSHNISNATTPGYNRQEVVQSSAGGINYGYGFVGQGTQVT 62
           +N+ SI +S L AA A  ATT HNI+N  TPGY+RQ V+Q+S GG N G G++G GT V 
Sbjct: 2   SNLLSIAKSGLAAAHAGIATTGHNIANQATPGYSRQLVIQASLGGQNIGGGYIGNGTNVE 61

Query: 63  EIKRVYNDFLTKQALASQTSASSLDSYYAQISQINNMVADTKAGLSPALQDFFASVQNLA 122
            ++R+YNDFL  Q +++Q+S S LD+YY QI+++NNM+AD   GLSP + DFF  +Q+L 
Sbjct: 62  TVRRIYNDFLGAQVVSAQSSKSQLDTYYMQINKVNNMLADPSVGLSPVIADFFKGIQDLV 121

Query: 123 SNPNTQASRQTVLSQASTLVARISAINDQLSQSSASVNSQITSTVTTINSYAQQIAQLNQ 182
           +NP    SRQ +LS A  LVAR  +++ QL+     VNS+I   VT IN+YA+QI QLN 
Sbjct: 122 ANPGIAPSRQAMLSGAEALVARFQSLDGQLTGMRNGVNSEIAGAVTNINAYAKQIGQLND 181

Query: 183 AIVNAVGTGGGQQPNDLLDQRDQLVSELNKYVKITTVPQDTGAVSVFIGTGQSLVAGDQV 242
           AI  A   G GQ PNDLLDQRD L+ EL K  K+T V QD G  +VFIG GQ LV G   
Sbjct: 182 AISKAQ-NGSGQPPNDLLDQRDLLIGELAKQSKVTLVQQD-GNYNVFIGNGQPLVVGLST 239

Query: 243 TQLAVTNSPTDVSRLQVGQVLPGGGTATIPDSFFYDGGSLGGLLRYRTETLDPTQNALGR 302
            +L    S TD  R+QVG +   G T  +P+S    GG+LGGL  YR++TLDP QN+LGR
Sbjct: 240 YELTAVPSSTDPGRMQVGYI-ANGKTVILPESSL-TGGNLGGLFEYRSKTLDPIQNSLGR 297

Query: 303 ITIAMGTAFNQQQQLGLDQNGNPGTNMFNISSPNLIGYPTNTGTTDLKAVITDPSSLSTS 362
           I + + + FN+Q +LG DQNG  G + FN+++P +     NTG   + A I     L+TS
Sbjct: 298 IALGLASTFNEQHRLGQDQNGKFGGDFFNMATPQISSSKENTGNAKIDATINSVDKLTTS 357

Query: 363 DYTLTYDGTNYTFTRLSDNTKTVKAAADFPVT---LDGVTYSNGAAAPGPFAPSIPSGNI 419
           DY L+YDG+NYT TRLSDN     +  DFP T   +DG+++S   +     A ++ +G+ 
Sbjct: 358 DYRLSYDGSNYTVTRLSDNVAISASNMDFPATPIEMDGISFSMDTSVG---AGTMAAGDE 414

Query: 420 YKIQPTANGAAAFSLALNNTQLLASAAPISTSANATNNVNASMPA--TNTGNAIISNTAL 477
           + I+PT NGA+  S+ + + + +A+  PI T+A   N    ++ A   N G   ++  AL
Sbjct: 415 FIIKPTINGASGLSVLIKDIKQIAAGTPIRTNAPIANTGTGAISAGTINAGFDAVTAAAL 474

Query: 478 DSTKFQQGSSVSFTASVSGSQVQLSAAWTGA---APVPTVTYTNPDGSTGTATGGAAFNY 534
                   ++ +F+   +G  V ++   T     A +P    T P              Y
Sbjct: 475 PVDLIYDAAANTFSGFPAGMDVTVNVGGTKTVYPAALPPAETTVP--------------Y 520

Query: 535 TPGMTISSGGVSFTLTGTP 553
           T G  +S GG    ++GTP
Sbjct: 521 TAGAIVSFGGAEIKISGTP 539



 Score =  150 bits (378), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 91/219 (41%), Positives = 125/219 (57%), Gaps = 13/219 (5%)

Query: 564 APVAANKGTATINAGSVTPAYLTTTTPLTKPTTLTFNNTASPPVFNISPAVPAGGGTITH 623
           AP+A N GT  I+AG++   +    T    P  L ++  A     N     PAG     +
Sbjct: 447 APIA-NTGTGAISAGTINAGF-DAVTAAALPVDLIYDAAA-----NTFSGFPAGMDVTVN 499

Query: 624 KDGTTT----AIAGGASTLSYTAGDTYEISGVKFQISSQPANGDQFTIAANTNATSDNRN 679
             GT T    A+    +T+ YTAG      G + +IS  PA+GD F+I+ANTN   DNRN
Sbjct: 500 VGGTKTVYPAALPPAETTVPYTAGAIVSFGGAEIKISGTPADGDTFSISANTNGDGDNRN 559

Query: 680 MLAMANLQTANTING--TSFQGSYSQLVATIGNKTNEINVTNTAEKTRLTAIQNQQQSDS 737
           ML +  LQT N + G   S+  +YSQLV+ +GNKT E+   + AE   L  +Q  QQS+S
Sbjct: 560 MLLLGELQTKNVLQGGTASYNSAYSQLVSQVGNKTRELETNSLAEGALLKQMQTAQQSES 619

Query: 738 GVNQDEELAHMIRNQQQYQAAAKIIQAASDMINALLSLG 776
           GVN DEE  +++R QQ YQA+ K++QA SDM + L+SLG
Sbjct: 620 GVNLDEEATNLLRYQQAYQASGKVMQAVSDMFDVLISLG 658


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.309    0.123    0.334 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,153,117
Number of extensions: 40491
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 3
Length of query: 777
Length of database: 1,000,347
Length adjustment: 89
Effective length of query: 688
Effective length of database: 707,092
Effective search space: 486479296
Effective search space used: 486479296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 132 (55.5 bits)