BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1901.p
         (324 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095092|ref|YP_001100167.1| flagellar biosynthesis protein ...   363   e-102

>gi|134095092|ref|YP_001100167.1| flagellar biosynthesis protein
           FlgJ [Herminiimonas arsenicoxydans]
          Length = 317

 Score =  363 bits (933), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/323 (57%), Positives = 236/323 (73%), Gaps = 10/323 (3%)

Query: 5   INPS-NPTESLAVDANGLNGLREAAKQNSPEAIKGAAKQFEALFLNMVMKSMRDATPQNG 63
           I P+ N   SLA+D  G+  L+++A+QNSP+++K AAKQFEALF+NM+MKSMR+ATPQ G
Sbjct: 2   ITPADNSNSSLAIDTKGIESLKQSARQNSPDSLKAAAKQFEALFMNMIMKSMREATPQEG 61

Query: 64  PFDNEQTKMFTSMLDQQLSQSLAQRGVGLADVLTRQLSASLPKKLPDAQDLDGTGQPG-- 121
            FDN+QTKM+TSMLDQQ+SQS+A +G+GLA+VL RQLS +       A   + T   G  
Sbjct: 62  VFDNQQTKMYTSMLDQQMSQSMANKGIGLAEVLIRQLSVNNAVADTAAMSDERTSATGGN 121

Query: 122 EEGVPMGIPLVKDMSEADRAKFIQSFANQQAADSTNQDGRNNKQRRNSNKPAHVEAFQNR 181
           E G+   +  ++D+     +K   ++  +    +  +   +      S +PAHV+AFQN+
Sbjct: 122 EIGLMQAVQ-IRDIY-GKHSKLAAAYEGEDTTVAAAEIAVST-----SGQPAHVQAFQNK 174

Query: 182 LQADAEIASKITGIPAKFMLAQAALETGWGKKEIITRDGRSAHNLFGIKATGNWTGKVVE 241
           L A AE ASK TGIPAKFML QAALE+GWGK  + T DG S+HNLFGIKATG W GK V+
Sbjct: 175 LNAHAEEASKTTGIPAKFMLGQAALESGWGKHVMRTPDGGSSHNLFGIKATGGWKGKTVD 234

Query: 242 ATTIEYINGKPQKRVEKFRAYDSYADAFKDYANLLRSNPRYEKVLASAQDAHGFAYGLQR 301
           A T EYING PQKRVEKFRAYDSYAD+F+DYA LL++NPRYEKVLA+A D  GFA GLQR
Sbjct: 235 AVTTEYINGAPQKRVEKFRAYDSYADSFRDYAKLLKNNPRYEKVLANASDVQGFAQGLQR 294

Query: 302 AGYATDPHYAEKLSRIIRQSLSA 324
           AGYATDP+YA KL+ II ++LSA
Sbjct: 295 AGYATDPNYAAKLTHIINKNLSA 317


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.313    0.128    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 588,873
Number of extensions: 23399
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 242
Effective length of database: 730,157
Effective search space: 176697994
Effective search space used: 176697994
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)