BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1900.p
         (376 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095093|ref|YP_001100168.1| flagellar basal body P-ring pro...   508   e-145

>gi|134095093|ref|YP_001100168.1| flagellar basal body P-ring
           protein [Herminiimonas arsenicoxydans]
          Length = 377

 Score =  508 bits (1309), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 263/374 (70%), Positives = 315/374 (84%), Gaps = 6/374 (1%)

Query: 3   MIRMGGKLLSAAAVAALCLAAAVPANAERLKDLASIQGVRQNQLVGYGLVVGLDGSGDQT 62
           +I+   ++L+ +A    CL   + + AERLKDL S+QGVRQNQL+GYGLVVGLDGSGDQT
Sbjct: 10  IIKKSLQMLACSA----CLLMPLASQAERLKDLTSVQGVRQNQLIGYGLVVGLDGSGDQT 65

Query: 63  TQTPFTVQSVISMLQQLGVNVPTGTSSNMQLKNVAAAMVTATLPAFAQPGQLIDVTVSSI 122
           TQTPFTVQSVISM+QQ+G+N+P GT  N+QLKNVAA MVT++LPAFAQPGQ +D+TVSS+
Sbjct: 66  TQTPFTVQSVISMMQQMGINLPQGT--NLQLKNVAAVMVTSSLPAFAQPGQTLDITVSSM 123

Query: 123 GNAKSIRGGTLLMAPLKGADGQIYAIAQGNIVIGGAGGSAAGSSTIINQLSAGRISGGAT 182
           GNAKS+RGGTLLM PLKGADGQIY +AQGN+V+GGAG +A GS   IN LS GRIS GAT
Sbjct: 124 GNAKSLRGGTLLMTPLKGADGQIYGMAQGNVVVGGAGAAANGSKAQINHLSVGRISAGAT 183

Query: 183 VERAVPSSLGGGDMVVLELNDNDFSTASRVVDALNKRFGSDTAVAQDGRVIRVRAPISSG 242
           VERAV ++LG GD++ LEL ++DFSTASRVVDA+N RFG  TA AQDGRVIRVRAP S+ 
Sbjct: 184 VERAVATTLGQGDVIFLELKESDFSTASRVVDAVNARFGPQTAAAQDGRVIRVRAPASND 243

Query: 243 DRVAFLGALENVDVTPGKLAAKVILNARTGSVVMNQSVMLETCAVSHGNLSVVIQADNAV 302
           +RV+FLGALE+++VTP +++AKVI+NARTGSVVMNQ+V L+ CAVSHGNLSV I     +
Sbjct: 244 ERVSFLGALESINVTPAQVSAKVIMNARTGSVVMNQAVTLDACAVSHGNLSVTINTQPVI 303

Query: 303 SQPNALSGGQTAGVQNAQVSINKEPGKVMLLKGGASLADVVKALNAIGATPQDLLAILQA 362
           SQP   SGGQT   Q +Q+ I+KEPGKV+LLK   SLADVVKALN+IGATPQDLLAILQA
Sbjct: 304 SQPAPFSGGQTVVAQQSQIEISKEPGKVILLKNSTSLADVVKALNSIGATPQDLLAILQA 363

Query: 363 MKAAGSLRAELEVI 376
           MKA+GSLRAELE+I
Sbjct: 364 MKASGSLRAELEII 377


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.130    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 537,666
Number of extensions: 18194
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 293
Effective length of database: 726,862
Effective search space: 212970566
Effective search space used: 212970566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 129 (54.3 bits)