BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1899.p
         (219 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095094|ref|YP_001100169.1| basal-body outer-membrane L (li...   263   7e-72

>gi|134095094|ref|YP_001100169.1| basal-body outer-membrane L
           (lipopolysaccharide layer) ring protein [Herminiimonas
           arsenicoxydans]
          Length = 223

 Score =  263 bits (671), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 131/223 (58%), Positives = 165/223 (73%), Gaps = 4/223 (1%)

Query: 1   MKNTLKLATIAGVLAVTGCTTVPDSIVTGPKTARPQPAS-YAPPTSGAIFQSAVYRPLLE 59
           MK +L    + G   ++ C   PD+IV  P TARPQ AS  APP +GAIFQ+A YRP+ E
Sbjct: 1   MKKSLMALIVVGSFLLSACALRPDTIVNTPLTARPQAASTIAPPANGAIFQAAAYRPMFE 60

Query: 60  DRRARLVGDTLTIVINEKTSAGKSAASSASKTGAVASPAPTIFG---TSIKELSANGSSS 116
           DRRARL+GDT+TIVINEK+SAGK A S+ASKTG+V + AP +FG   +    LSA+GS++
Sbjct: 61  DRRARLIGDTITIVINEKSSAGKQAGSAASKTGSVTASAPNVFGLLGSLTNRLSASGSNA 120

Query: 117 AKFDDKGATTSSNTFTGTIGVTVVEVLPNGNLVVSGEKQVALDKGVEYVRFSGTVSPDNI 176
            K++DKGA TSSN F  T+ VTV++VL NGNL+V+GEKQV+LDKG E++RFSG V P  +
Sbjct: 121 IKYEDKGAVTSSNNFISTMTVTVIDVLSNGNLIVAGEKQVSLDKGSEFIRFSGVVDPSTV 180

Query: 177 QTGNTVSSTLVADAKVEYRTNTRVDMADFMSSLGRFFFSVSPF 219
            +GN VSST VADAK+EYRTN+ VD A+  S L RFF SV P 
Sbjct: 181 NSGNIVSSTQVADAKIEYRTNSTVDGAEVASMLARFFLSVLPL 223


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.312    0.126    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 357,607
Number of extensions: 12833
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 141
Effective length of database: 743,337
Effective search space: 104810517
Effective search space used: 104810517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 127 (53.5 bits)