BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1897.p
         (245 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095096|ref|YP_001100171.1| basal-body rod protein [Hermini...   323   4e-90
gi|134095095|ref|YP_001100170.1| basal-body rod protein [Hermini...    83   1e-17

>gi|134095096|ref|YP_001100171.1| basal-body rod protein
           [Herminiimonas arsenicoxydans]
          Length = 246

 Score =  323 bits (829), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 155/246 (63%), Positives = 194/246 (78%), Gaps = 1/246 (0%)

Query: 1   MDRLVYTAMSGAKHTLEQQASASNNLANATTTGFRAQLNTFRSAPVVGEGLPTRAFVVDS 60
           MDRL+YTAM+GAK  LEQQA+ ++NL+N +TTGFRAQL+TFR+ PVV   LPTR FVVDS
Sbjct: 1   MDRLIYTAMTGAKQILEQQATVTHNLSNVSTTGFRAQLDTFRAVPVVNAALPTRTFVVDS 60

Query: 61  TAGSDFSQGPIQDTGRALDVAVQGRGWIAVQTADGGEAYTRNGSFKINENGILQTQNGQS 120
           T G+DF  GP Q TGR LDVA+QG+GW+AV+ ADG E YTR+GS K+NENG+LQTQ+G +
Sbjct: 61  TVGNDFRAGPFQQTGRDLDVAIQGKGWLAVERADGTEGYTRSGSLKVNENGVLQTQSGLN 120

Query: 121 VQGDGGPITIPPDTTVAIAADGTVSSIPTNGIPNAVNVLGRIKLVNPDEKNLQRGDDGLF 180
           V GDGGPI+IPPD  + IA DGT+SS+ +   P     +GR+KLVNPDE NL+R DDGLF
Sbjct: 121 VLGDGGPISIPPDVQITIAKDGTISSVESGSKPGQTIQVGRLKLVNPDEANLKRADDGLF 180

Query: 181 RTITGA-AQPDANVRLASGALEGSNVNVVEAMVNMINLSRQFEMNMKVIQTAEGDASKAT 239
            T  G     DA+V L SGA+EGSNVNVV+AMVNMI L+RQFE++M +++ AE +A+KAT
Sbjct: 181 VTKDGEDVAADADVSLVSGAVEGSNVNVVDAMVNMITLARQFELHMNMLKHAESNAAKAT 240

Query: 240 SILSLS 245
             L+LS
Sbjct: 241 EFLALS 246


>gi|134095095|ref|YP_001100170.1| basal-body rod protein
           [Herminiimonas arsenicoxydans]
          Length = 242

 Score = 83.2 bits (204), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 117/244 (47%), Gaps = 31/244 (12%)

Query: 23  SNNLANATTTGFRAQLNTFRSAPV---------------VGEGLPTRAFVVDSTAGSDFS 67
           SNNLAN +TTGF+     F                    +  GL     V         +
Sbjct: 5   SNNLANVSTTGFKRSRAVFEDLLYQTIRQPGAASSQQTELPSGLQLGTGVRPVATERIHT 64

Query: 68  QGPIQDTGRALDVAVQGRGWIAVQTADGGEAYTRNGSFKINENGILQTQNGQSVQGDGGP 127
           QG +Q T  A ++A++G G+  V   DG  AYTR+GSF+ +  G + T +G  +Q     
Sbjct: 65  QGNLQLTSNAKNLAIEGDGFFQVLMPDGTTAYTRDGSFQTDNQGQMVTSSGFPIQ---PA 121

Query: 128 ITIPPD-TTVAIAADGTVSSIPTNGIPNAVNV--LGRIKLVNPDEKNLQRGDDGLFRTIT 184
           ITIP + T++ I+ DG V S+  +G   A  +  L     +NP    + RG++ L+   T
Sbjct: 122 ITIPENATSITISRDGIV-SVTVSGTTAATEIGALQLATFINPAGL-MSRGEN-LYVETT 178

Query: 185 GAAQPDANVRLASGA-------LEGSNVNVVEAMVNMINLSRQFEMNMKVIQTAEGDASK 237
            +   + N   ++GA       +E SNVNVVE +V+MI   R +E+N K I T++    +
Sbjct: 179 ASGTANTNTPGSNGAGLLKQNYVETSNVNVVEELVSMIQTQRAYEINSKAITTSDQMLQR 238

Query: 238 ATSI 241
            T I
Sbjct: 239 LTQI 242


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.312    0.128    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 435,292
Number of extensions: 18383
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 2
Length of query: 245
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 166
Effective length of database: 740,042
Effective search space: 122846972
Effective search space used: 122846972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 127 (53.5 bits)