BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1896.p
         (429 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095097|ref|YP_001100172.1| flagellar hook protein FlgE [He...   347   9e-97
gi|134095095|ref|YP_001100170.1| basal-body rod protein [Hermini...    70   2e-13

>gi|134095097|ref|YP_001100172.1| flagellar hook protein FlgE
           [Herminiimonas arsenicoxydans]
          Length = 418

 Score =  347 bits (889), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 207/441 (46%), Positives = 281/441 (63%), Gaps = 35/441 (7%)

Query: 1   MSFQQGLSGLNGAAKSLDVIGNNVANASTVGFKQSQTQFADMYANSMNRSGNSPVGIGVT 60
           MSFQQGLSGLN A+KSL+ IGNNVAN+ TVGFKQSQ QFAD+YA++++ SG + +GIG  
Sbjct: 1   MSFQQGLSGLNAASKSLEAIGNNVANSGTVGFKQSQVQFADIYASTLSGSGAAQIGIGTQ 60

Query: 61  VADVSQQFTQGNITSSNNPLDIAINGDGFFQVSSSLTNQSPMYGRNGQFQLDKNGYIVNP 120
           +A V+Q F+QGNIT+SNNPLD+AINGDGFF++SS  T     Y RNGQF+L K G+I   
Sbjct: 61  IARVAQLFSQGNITASNNPLDMAINGDGFFRMSSGGTIS---YARNGQFELSKEGFI--Q 115

Query: 121 SMNGAYLMGWAAGASG----GDPVALQIDTSSIPATTTTTINTKVNLDSRSPNIPTTTVF 176
           S +GA L G+ A A+G    G P  L+I+ + +    TT    K+ LDSR  N+  +  F
Sbjct: 116 SASGARLTGYMADANGVVAIGAPAELKINKADLAPEATTKYELKLTLDSRK-NVLNSANF 174

Query: 177 NANDPTTYTNSTGVTIYDSLGNPYSVQTYYVKNPPNTAVTPPTTTWDVYAK-----VGSN 231
           N +DPTT+ +ST V +YDSLGN + ++T+YVK             WDV+A      +G +
Sbjct: 175 NPDDPTTFNDSTSVPVYDSLGNSHILRTFYVKTAGGE--------WDVFATNDGVPIGYD 226

Query: 232 TLVTTSGGTTPLKLGSMTFNSTGALVSGGSMTIDLTSAGPNANIAAGGGNFAST---IAL 288
                      + LG+M F   G L+     +I  T      +++ G    A+T   I +
Sbjct: 227 PAAVPPANAP-VALGTMQFGPGGVLIP----SIPPTPLVVPMDVSTG----ATTPFNIVI 277

Query: 289 NYAGSTQTGSAFVNLAQNQDGMPPGTLSSFSIDKDGTIVGSYSNQQTKNLGNVVLVNFAN 348
           ++ G+ Q   +F    Q  DG PPGTL++F++  DG+IVG YSN +   LG V+L +FAN
Sbjct: 278 DHTGTQQFAQSFGVNKQLPDGFPPGTLTAFNVASDGSIVGRYSNGKVNVLGQVILSSFAN 337

Query: 349 PNGLQPLGNNLYQATGAAGSPLVGKPSTGTFGTLQARAVEDSNVDLTAELVNMIVAQRVY 408
           PNGLQ +G+N +  T  +G  L   P +   G++Q+  +E+SNVDLTAELVNMI AQR Y
Sbjct: 338 PNGLQNIGDNQWVETAESGVALTSAPGSSGLGSVQSARIEESNVDLTAELVNMITAQRYY 397

Query: 409 QANSQTIKVQDTVLQTLVSLR 429
           QAN+QTIK QD +LQTLV+LR
Sbjct: 398 QANAQTIKTQDQILQTLVNLR 418


>gi|134095095|ref|YP_001100170.1| basal-body rod protein
           [Herminiimonas arsenicoxydans]
          Length = 242

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 13/116 (11%)

Query: 17  LDVIGNNVANASTVGFKQSQTQFADMYANSMNRSGNSP-----------VGIGVTVADVS 65
           +DVI NN+AN ST GFK+S+  F D+   ++ + G +            +G GV      
Sbjct: 1   MDVISNNLANVSTTGFKRSRAVFEDLLYQTIRQPGAASSQQTELPSGLQLGTGVRPVATE 60

Query: 66  QQFTQGNITSSNNPLDIAINGDGFFQVSSSLTNQSPMYGRNGQFQLDKNGYIVNPS 121
           +  TQGN+  ++N  ++AI GDGFFQV   + + +  Y R+G FQ D  G +V  S
Sbjct: 61  RIHTQGNLQLTSNAKNLAIEGDGFFQV--LMPDGTTAYTRDGSFQTDNQGQMVTSS 114



 Score = 69.7 bits (169), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 312 PGTLSSFSIDKDGTIVGSYS-NQQTKNLGNVVLVNFANPNGLQPLGNNLYQATGAAGSPL 370
           P   +S +I +DG +  + S       +G + L  F NP GL   G NLY  T A+G+  
Sbjct: 125 PENATSITISRDGIVSVTVSGTTAATEIGALQLATFINPAGLMSRGENLYVETTASGTAN 184

Query: 371 VGKPSTGTFGTLQARAVEDSNVDLTAELVNMIVAQRVYQANSQTIKVQDTVLQTLVSL 428
              P +   G L+   VE SNV++  ELV+MI  QR Y+ NS+ I   D +LQ L  +
Sbjct: 185 TNTPGSNGAGLLKQNYVETSNVNVVEELVSMIQTQRAYEINSKAITTSDQMLQRLTQI 242


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.309    0.126    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 695,518
Number of extensions: 25391
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 3
Length of query: 429
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 345
Effective length of database: 723,567
Effective search space: 249630615
Effective search space used: 249630615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 130 (54.7 bits)