BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1895.p
         (240 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095098|ref|YP_001100173.1| flagellar basal body rod modifi...   206   1e-54

>gi|134095098|ref|YP_001100173.1| flagellar basal body rod
           modification protein [Herminiimonas arsenicoxydans]
          Length = 225

 Score =  206 bits (523), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 108/238 (45%), Positives = 148/238 (62%), Gaps = 22/238 (9%)

Query: 3   IVSNDLLGAMNGASSTSSTSSSSSLDNNSPDAIQNRFLTLLIAQMKNQDPSNPMDNSQLT 62
           ++   LL  MNG S+   +++  +         Q+RFLTLL+ QMKNQDP NP+DN+Q+T
Sbjct: 10  VLPQALLDQMNGTSAAKKSTAEEA---------QDRFLTLLVTQMKNQDPLNPLDNAQVT 60

Query: 63  SQMAQLSTVSGISQLNNSLSTLMSSINSSQALSTANMIGHSVLAPGNSIQLMSDTSKDAN 122
           SQ+AQLSTV+GI +LN +L ++M S  S+QAL  ANMIGH VLAPG++I L         
Sbjct: 61  SQLAQLSTVTGIDKLNGTLESMMGSYQSNQALQAANMIGHGVLAPGSNISL--------- 111

Query: 123 GNDVTSQKAVLGVNLSGTASSVIVTIKDSTGAVVHTTDLGTQAAGAVPVIWDGSNDSGGK 182
               T  K ++GV       +  + +KD+ G V+HT DLG   AG VP++WDG+   G K
Sbjct: 112 ----TENKGLMGVEFPQDVDAAEILVKDAAGNVIHTIDLGAHPAGTVPLLWDGTLADGSK 167

Query: 183 APDGKYTFTVSASNNGTAVAATALSFGTVSSVSTAADGVKLNVTNVGTIKPTDVVQIL 240
           A DG Y F V AS  G  V+A AL FG V++VST+  GV++NV  +G +   D+ QIL
Sbjct: 168 AEDGSYQFEVKASLAGKPVSANALQFGIVTTVSTSPGGVQINVPGLGALNLADIRQIL 225


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.305    0.118    0.308 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 363,322
Number of extensions: 12318
Number of successful extensions: 38
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 161
Effective length of database: 740,042
Effective search space: 119146762
Effective search space used: 119146762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 127 (53.5 bits)