BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1893.p
         (142 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095100|ref|YP_001100175.1| basal-body rod protein [Hermini...   142   7e-36

>gi|134095100|ref|YP_001100175.1| basal-body rod protein
           [Herminiimonas arsenicoxydans]
          Length = 139

 Score =  142 bits (358), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 74/141 (52%), Positives = 96/141 (68%), Gaps = 5/141 (3%)

Query: 1   MVSKLDDYFRFNELALNLRAQRQQVLASNIANADTPNYKARDVNFADALK-NALDNKTTA 59
           M+ KLDD  RF E AL+LRAQRQQ+LASNIANADTPN+KARD++F  AL+     +   A
Sbjct: 1   MIGKLDDLMRFQETALSLRAQRQQLLASNIANADTPNFKARDIDFNKALQGAIAKSAGGA 60

Query: 60  MPPLQLERTSAAHVAGTAPDNGPGSIGGTALQYRTPAQGSVDGNTVDLDVERNEFVDNGI 119
             P  L +T+ AH++     N   +IGG  L Y    QG++DGNTVD+DV+RN+F DN +
Sbjct: 61  AAPAALVKTTTAHLSS----NTHATIGGAPLLYSNTQQGNIDGNTVDMDVQRNQFTDNAM 116

Query: 120 RYEAGVTAVNGQIKAMMNAIQ 140
           RYE  VT  + +IK M+ AIQ
Sbjct: 117 RYEVSVTLASSKIKGMLTAIQ 137


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.313    0.130    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 269,216
Number of extensions: 10922
Number of successful extensions: 27
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 1,000,347
Length adjustment: 73
Effective length of query: 69
Effective length of database: 759,812
Effective search space: 52427028
Effective search space used: 52427028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 124 (52.4 bits)