BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1892.p
         (254 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095101|ref|YP_001100176.1| basal-body periplasmic P ring a...   254   2e-69

>gi|134095101|ref|YP_001100176.1| basal-body periplasmic P ring
           assembly protein [Herminiimonas arsenicoxydans]
          Length = 235

 Score =  254 bits (650), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 118/207 (57%), Positives = 158/207 (76%)

Query: 48  KQDLQVVQQVAEQFLKSQTSGLPGSVTVTIDPADPRLTLASCLEPQAFMPNGGRLFGRTT 107
           +QDL V++Q AEQFL++Q +GLPG V VT+   DPR  L +C+ P+AF+P   + +G+T+
Sbjct: 29  RQDLGVLKQTAEQFLRAQAAGLPGEVRVTMGSIDPRTKLPACVAPEAFLPASSKAWGKTS 88

Query: 108 VGVKCIAPSPWTIYLRANVQVISDYLVAAVPLAQGQTISASDITRIRGDMSALPSGVLTE 167
           VG++C APS WTIY++A VQV  +Y+ AA PL+QGQTI   DI  ++GD++ LP+GV+T+
Sbjct: 89  VGLRCSAPSRWTIYVQAKVQVHGEYIAAAAPLSQGQTIGQGDIATLKGDLTTLPAGVITD 148

Query: 168 ESQAIGRVANMSLRAGTPLRMDTIRNQRVVQQGQPVRVVSNGPGFQISTEARALTNANEG 227
            SQAIGR A  ++  G PLR D +RNQ+ +QQGQ VRVV NG GF +S+EARAL NANEG
Sbjct: 149 ASQAIGRTAATTVALGAPLRQDALRNQQAIQQGQAVRVVVNGAGFSVSSEARALNNANEG 208

Query: 228 QMAQARTAAGQVVSGIAKAGGILEINY 254
           Q+ Q RT AGQV+SGIAK GGI+E+ Y
Sbjct: 209 QLTQVRTPAGQVISGIAKLGGIVELTY 235


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 397,760
Number of extensions: 14264
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 174
Effective length of database: 736,747
Effective search space: 128193978
Effective search space used: 128193978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)