BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1891.p
         (106 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095102|ref|YP_001100177.1| negative regulator of flagellin...    79   4e-17

>gi|134095102|ref|YP_001100177.1| negative regulator of flagellin
           synthesis (partial) [Herminiimonas arsenicoxydans]
          Length = 102

 Score = 79.3 bits (194), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 68/99 (68%), Gaps = 7/99 (7%)

Query: 8   KSAALNTEQTQTQT-RNNAQAGAASGNGAPAAAAASDSVRLSSTYQALETKVNSNSSSFD 66
           K+A +    TQT+  +   +A  AS + AP+A     +V LS+  QAL ++V+S +S FD
Sbjct: 9   KTAGIGVSTTQTRAGKGTEKAAGASSSKAPSA-----NVTLSTQVQALTSQVSS-ASVFD 62

Query: 67  AKKVAEIKAAIANGTFQIDPEKVANGLIDTVKTLISARQ 105
            KKV EIKAAIA G FQ++ E+VA+GL+DTVK LISAR+
Sbjct: 63  TKKVEEIKAAIAGGQFQVNAERVADGLMDTVKDLISARR 101


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.302    0.114    0.284 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 82,146
Number of extensions: 1279
Number of successful extensions: 7
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 106
Length of database: 1,000,347
Length adjustment: 69
Effective length of query: 37
Effective length of database: 772,992
Effective search space: 28600704
Effective search space used: 28600704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 122 (51.6 bits)