BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1887.p
         (493 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094537|ref|YP_001099612.1| flagellar biosynthesis regulato...   506   e-144

>gi|134094537|ref|YP_001099612.1| flagellar biosynthesis regulator
           FlhF [Herminiimonas arsenicoxydans]
          Length = 423

 Score =  506 bits (1302), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 243/321 (75%), Positives = 271/321 (84%)

Query: 173 LSEVMSEIRSMRGVLETQLAEISWGGTQKREPLKGIVLKEMLAAGFSASLSRLITENLPA 232
           L  VMSEIRSMRG+LE QLAE++W    KREP K  VL+EMLAAGFSASL+R +TE +PA
Sbjct: 103 LHSVMSEIRSMRGMLEMQLAELAWTDQHKREPAKSSVLREMLAAGFSASLARYLTERMPA 162

Query: 233 NSKSQDIMFWVKSVLARNLNTLANENELLENGGVFALVGPTGVGKTTTTAKLAARCVMRH 292
            +  Q  M W+K++L RNL T+ NENE+LE GGV+ALVGPTGVGKTTTTAKLAARCVMRH
Sbjct: 163 GASKQSGMDWIKAILTRNLATIGNENEILEKGGVYALVGPTGVGKTTTTAKLAARCVMRH 222

Query: 293 GSGKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAG 352
           G GKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDE DLRIAL+ELKGKHTVLIDT G
Sbjct: 223 GPGKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDEADLRIALDELKGKHTVLIDTVG 282

Query: 353 VGQRDQMVAEQDAMLAGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEA 412
           V QRD MVAEQ AML+GAG  +KRLLCLNAT+TG TLNEV  +Y   GLAGCI+TKLDEA
Sbjct: 283 VSQRDNMVAEQIAMLSGAGSQVKRLLCLNATSTGETLNEVARSYMGDGLAGCILTKLDEA 342

Query: 413 ATIGNVLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKRETAPFEFQEGELP 472
           ATIG+ LDVVIR KLNL+YVANGQRVPEDLHVAN+ YL DRAFK KRETAPF+F + E+P
Sbjct: 343 ATIGSALDVVIRQKLNLYYVANGQRVPEDLHVANQQYLVDRAFKLKRETAPFQFSDAEIP 402

Query: 473 GVIGPTAMSMNDKGLREVSFG 493
            V+  TA +MNDK LREV  G
Sbjct: 403 LVMANTAKAMNDKSLREVILG 423



 Score = 79.0 bits (193), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 43/54 (79%)

Query: 1  MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAP 54
          MNV+KF A++SR AW  VREALGPDAVILSNR +  GVEILA+A EDM +L  P
Sbjct: 1  MNVRKFTASTSRGAWSLVREALGPDAVILSNRAVEGGVEILALAGEDMASLAEP 54


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 780,991
Number of extensions: 28760
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 3
Length of query: 493
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 408
Effective length of database: 720,272
Effective search space: 293870976
Effective search space used: 293870976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)