BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1886.p
         (702 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094536|ref|YP_001099611.1| export protein for flagellar bi...  1073   0.0  

>gi|134094536|ref|YP_001099611.1| export protein for flagellar
           biosynthesis [Herminiimonas arsenicoxydans]
          Length = 665

 Score = 1073 bits (2774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/669 (79%), Positives = 590/669 (88%), Gaps = 6/669 (0%)

Query: 34  MMVLPLPAFMLDLLFSFNISLSVIVLMTALYTVKPLDFIAFPAVLLVSTMLRLSLNVAST 93
           MM+LPLPA +LD+ FSFNI+LS+IVL+TALYTVKPLDF+ FP VLLVSTMLRLSLNVAST
Sbjct: 1   MMILPLPAIVLDIFFSFNIALSIIVLLTALYTVKPLDFMVFPTVLLVSTMLRLSLNVAST 60

Query: 94  RIVLTEGHTGPDAAGKVIEAFGHFLIGGNYTVGIVVFVILTIINFMVVTKGAGRIAEVGA 153
           R+VLTEGH GPDAAGKVIEAFGHFLIGGNYTVG+VVF+ILTIINF VVTKGAGRIAEVGA
Sbjct: 61  RVVLTEGHNGPDAAGKVIEAFGHFLIGGNYTVGLVVFIILTIINFTVVTKGAGRIAEVGA 120

Query: 154 RFTLDAMPGKQMAIDADLNAGLIGEPEARARRKEVAQESEFYGAMDGASKYVRGDAVAGI 213
           RF LDAMPGKQMAIDADLNAGLIGE +AR RR +VAQE+EFYGAMDGASKYVRGDA+AGI
Sbjct: 121 RFALDAMPGKQMAIDADLNAGLIGEQDARLRRTQVAQEAEFYGAMDGASKYVRGDAIAGI 180

Query: 214 IVTVVNIVGGLVVGMVQHDLAFDAALKNYTLLAIGDGLVAQIPSLIISTAAGVVVSRVAN 273
           IVTV+N+VGGL+VGMVQHD+AF AAL+NYTLLAIGDGLVAQIPSLIISTAAG+VVSRVA+
Sbjct: 181 IVTVINVVGGLIVGMVQHDMAFSAALENYTLLAIGDGLVAQIPSLIISTAAGIVVSRVAS 240

Query: 274 DQDVGGQLINQLFAKPEVLYITAVIIGGMGLIPGMPHIAFILLAAAMGGGAYAIGKRVEK 333
           +QD+GGQL+ QLFAKP+VLYITA I+GGMGLIPGMPH++F+ LA  + G AY I +R  K
Sbjct: 241 EQDIGGQLVGQLFAKPQVLYITAAIVGGMGLIPGMPHMSFLFLAGVLAGAAYLISQRALK 300

Query: 334 TKAEAAAAAPQATASAAAPAEGEEATWSDVMPVDTLGLEVGYRLIPLVDKGQGGELLKRI 393
               A    P+ TA  A P E EEA+W D++ VDTLGLEVGYRLIPLVDK Q GELL+RI
Sbjct: 301 ----APQVEPEVTAPPAVP-EVEEASWQDIVQVDTLGLEVGYRLIPLVDKSQSGELLRRI 355

Query: 394 KGIRKKFAQEVGFLSPPIHIRDNLELKPSAYRITLKGVEVGNGEAHAGQYLAINPGMVTG 453
           KGIRKKFAQEVGFLSPP+HIRDNLELKPSAYRITLKGVEVG+GEA AGQ+LAINPGMV+G
Sbjct: 356 KGIRKKFAQEVGFLSPPVHIRDNLELKPSAYRITLKGVEVGSGEALAGQFLAINPGMVSG 415

Query: 454 PLPGMMTSDPAFGLPAVWIDNSLREQASTMGYTVVDAGTVVATHLNHLITTHAAELLGRQ 513
            LPG  TSDPAFGLPA WID SLREQA  MGYTVVDAGTVVATHLNHLITTHAAELLGRQ
Sbjct: 416 TLPGQATSDPAFGLPATWIDASLREQAQGMGYTVVDAGTVVATHLNHLITTHAAELLGRQ 475

Query: 514 EVQSLLDHLGKEAPKLVEDLVPKMLPLGTLQKVLQNLLAEGVHIRDMRTIIETLAEHAAR 573
           EVQ LL+HL KE+PKLVEDLVPK++ L TLQKVLQNLL EGVHIRDM +IIETL EHA  
Sbjct: 476 EVQQLLEHLTKESPKLVEDLVPKLISLSTLQKVLQNLLIEGVHIRDMHSIIETLTEHATH 535

Query: 574 IQDPTDLTAIVRIALGRAIVQQIFPGESELAVMALDSKLERLLMQALQASGDSG-GIEPG 632
             D  +LTA+VRIALGRAIVQQ+FP  +EL+VM LD++LERLL QAL ASG  G GIEPG
Sbjct: 536 TNDVNELTALVRIALGRAIVQQLFPSTNELSVMTLDNRLERLLTQALSASGPEGAGIEPG 595

Query: 633 LADSLVQQTEMAAQRQEQMGFAPVLLVGAPLRTLLARFLRRALPQLRVLSHAEVPESKTI 692
           LAD++  Q E A ++QEQMG  PVLLV A LR LLARFLRRALPQL+VLSHAEVP+SKTI
Sbjct: 596 LADTIAAQAEAATRQQEQMGLTPVLLVPAQLRALLARFLRRALPQLKVLSHAEVPDSKTI 655

Query: 693 KVTSLVGGQ 701
           +VTSLVGGQ
Sbjct: 656 RVTSLVGGQ 664


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.137    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,084,895
Number of extensions: 40784
Number of successful extensions: 174
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1,000,347
Length adjustment: 88
Effective length of query: 614
Effective length of database: 710,387
Effective search space: 436177618
Effective search space used: 436177618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)