BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1885.p
         (391 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094535|ref|YP_001099610.1| part of export apparatus for fl...   450   e-128
gi|134095072|ref|YP_001100147.1| putative part of export apparat...    65   6e-12

>gi|134094535|ref|YP_001099610.1| part of export apparatus for
           flagellar proteins [Herminiimonas arsenicoxydans]
          Length = 390

 Score =  450 bits (1158), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 210/375 (56%), Positives = 280/375 (74%)

Query: 1   MAEDSDMERTEPATGKRIERAREQGDVPRSRELATTLMLLVGGSCVWLFSGPVVTSLDRI 60
           MAE+SD+E+TEPA+ +++E+AREQGDVPRSRELAT  +LL   +  W   G ++  L+ +
Sbjct: 1   MAEESDLEKTEPASPRKLEQAREQGDVPRSRELATCTLLLGASAAFWFTGGNMIAELNSM 60

Query: 61  LVATMSFERAAAFDPVVMFNMLSAHLIDVAVALIPLAFLMTLAAMAAPLMLGGWLFNVQS 120
           L + +SF+R  AFD  ++    +A +I + +A  P A ++ + A+A+P+++GGWLF+ Q+
Sbjct: 61  LASGLSFDREMAFDMELLLAHAAASIIKLLIAFAPAALILIVVALASPMLIGGWLFSAQA 120

Query: 121 LAPKFGKLNPISGFANMFSINSLVELGKAVLKTVLVGTVAWVAIRGQLDAVVGLGVESLK 180
           L P FG++NPI G  NM S  S VELGKA+ KT+L+G +AW  ++ ++D V+ L V  L+
Sbjct: 121 LQPNFGRMNPIKGLGNMVSTRSAVELGKAIAKTILIGCIAWTVMKYEIDGVLALSVTPLQ 180

Query: 181 TAGAHSAYLLWVSFITIVSALVLIAALDVPYQIWNYGRKLRMTREEVKQEHKESEGDPHI 240
           +      ++L +SF  IVS L++IA +D PYQ+W + +KL M+R++V+QE KES+G+P I
Sbjct: 181 SGIEQVGHILLISFTFIVSGLIIIAGIDAPYQMWQHAKKLMMSRQDVRQESKESDGNPEI 240

Query: 241 KGKIRAMQRAMARRRMMAEVPTADVVVTNPTHYAVALKYTEGKMGAPKVVAKGADDIAAK 300
           K KIR  QR MARRRMM EVPTADVVVTNPTHYAVALKY+E  M AP VVAKGAD++AAK
Sbjct: 241 KAKIRQQQREMARRRMMTEVPTADVVVTNPTHYAVALKYSENGMRAPTVVAKGADEVAAK 300

Query: 301 IRELAREHKVPLLEAPPLARALHTHTEIGDEIPEALYTAVAEVLAYVFQLRTYGKFGGNR 360
           IRE+A E+ V +LEAPPLARAL  H E+GDEIPEALY AVAEVLAYVFQLR Y K GG R
Sbjct: 301 IREIALENNVVMLEAPPLARALFRHAELGDEIPEALYIAVAEVLAYVFQLRAYSKNGGTR 360

Query: 361 PVEPTELNVPKELDP 375
           P +P +L VP ELDP
Sbjct: 361 PQKPGDLEVPPELDP 375


>gi|134095072|ref|YP_001100147.1| putative part of export apparatus
           for flagellar proteins (partial) [Herminiimonas
           arsenicoxydans]
          Length = 97

 Score = 65.1 bits (157), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 55/90 (61%), Gaps = 2/90 (2%)

Query: 270 PTHYAVALKYTEGKMGAPKVVAKGADDIAAKIRELAREHKVPLLEAPPLARALHTHTEIG 329
           P   AVAL Y  G   AP++VAKG   IA +I E A+EH V + E+  L  AL    E+ 
Sbjct: 9   PPPSAVALAYQSGD-SAPRIVAKGRGLIAEQIIERAKEHGVAIHESKELV-ALLLQVELD 66

Query: 330 DEIPEALYTAVAEVLAYVFQLRTYGKFGGN 359
           D IP ALY AVAE+LA+++++    + GGN
Sbjct: 67  DNIPPALYRAVAELLAWLYRVEAAQQRGGN 96


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 670,162
Number of extensions: 24106
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 2
Length of query: 391
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 307
Effective length of database: 723,567
Effective search space: 222135069
Effective search space used: 222135069
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)