BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1884.p
         (216 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094533|ref|YP_001099608.1| chemotaxis regulator CheZ [Herm...   259   7e-71
gi|134094188|ref|YP_001099263.1| chemotaxis protein CheZ-like [H...   150   4e-38

>gi|134094533|ref|YP_001099608.1| chemotaxis regulator CheZ
           [Herminiimonas arsenicoxydans]
          Length = 212

 Score =  259 bits (662), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 137/211 (64%), Positives = 164/211 (77%), Gaps = 1/211 (0%)

Query: 7   PARTSSVEGSGVSEEVLVRIGHMTRNLHDSLRGLGFDRLLEKAASDMPDARDRLEYVARM 66
           P+  +   G    +EVL R+GHMTR LHDSLRGLGFD+L+E+A+ D+PDARDRL+YVARM
Sbjct: 2   PSGMADERGDLAHDEVLSRVGHMTRALHDSLRGLGFDQLIERASHDIPDARDRLDYVARM 61

Query: 67  TEQAAQRVLNATELASPLQERIHDGASELKAQWDAASAGSFSEADYRALAAKTSAFLAQA 126
           TEQAAQRVLNATE A PLQ+RI   A+ + A W     G+FSE  YRA+A  T A+L Q 
Sbjct: 62  TEQAAQRVLNATEAAGPLQDRIQTDAASISATWQQTLQGAFSEEKYRAVAESTLAYLNQT 121

Query: 127 GEDSSVTKQQLLDIMMAQDFQDLTGQVIKRVTKLAHDLESQLVQLLVDYSPSETKRE-DG 185
              ++ TKQ L++IMMAQDFQDLTGQVIK+VT+LAH LE QL+QLLVDY+P E KRE D 
Sbjct: 122 QAATAETKQHLMNIMMAQDFQDLTGQVIKKVTELAHGLEQQLLQLLVDYAPPEIKREVDT 181

Query: 186 GLLNGPQIDPAGKDVIANQGQVDDLLESLGF 216
           GLLNGPQI+P G DV+A Q QVDDLL+SLGF
Sbjct: 182 GLLNGPQINPVGNDVVAGQAQVDDLLDSLGF 212


>gi|134094188|ref|YP_001099263.1| chemotaxis protein CheZ-like
           [Herminiimonas arsenicoxydans]
          Length = 253

 Score =  150 bits (379), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 88/201 (43%), Positives = 120/201 (59%), Gaps = 13/201 (6%)

Query: 25  RIGHMTRNLHDSLRGLGFDRLLEKAASDMPDARDRLEYVARMTEQAAQRVLNATELASPL 84
           R+G + R LHDSLR LG+DR L   AS++ DA+ RLEYVA +TEQAA +VLNA ++  P 
Sbjct: 57  RLGGIVRLLHDSLRELGYDRSLSDVASEITDAQGRLEYVATLTEQAANKVLNAIDIGMPQ 116

Query: 85  QERIHDGASELKAQWDAASAGSFSEADYRALAAKTSAFLAQAGEDSSVTKQQLLDIMMAQ 144
           Q+ +   A E+  +W     G  S  +++ LA  +  F A+  E +   K +LL+IMMAQ
Sbjct: 117 QDALSKTAKEMDTRWAQLFDGKLSVDEFKKLATDSRQFSAKVAEVTEAEKARLLEIMMAQ 176

Query: 145 DFQDLTGQVIKRVTKLAHDLESQLVQLLVDYSPSETK--REDGG-------LLNGPQIDP 195
           DFQD+TGQ+IK++  + H  ES+L QLL D +P E K  R +         L+NGP   P
Sbjct: 177 DFQDITGQLIKKIVTITHKAESELAQLLRDNAPPEIKAARAEAKPGDAPVQLMNGPSA-P 235

Query: 196 AGKDVIANQGQVDDLLESLGF 216
           A   +   Q  VD LL  LGF
Sbjct: 236 A---IAMVQDDVDGLLADLGF 253


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.312    0.129    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 363,525
Number of extensions: 13050
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 2
Length of query: 216
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 138
Effective length of database: 743,337
Effective search space: 102580506
Effective search space used: 102580506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 127 (53.5 bits)