BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1883.p (131 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094532|ref|YP_001099607.1| chemotactic response regulator ... 249 4e-68 gi|134094525|ref|YP_001099600.1| chemotactic response regulator ... 87 4e-19 gi|134095906|ref|YP_001100981.1| putative composite two componen... 74 4e-15 gi|134095909|ref|YP_001100984.1| twitching motility protein. pil... 69 7e-14 gi|134094861|ref|YP_001099936.1| nitrate/nitrite response regula... 67 2e-13 >gi|134094532|ref|YP_001099607.1| chemotactic response regulator [Herminiimonas arsenicoxydans] Length = 132 Score = 249 bits (635), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 120/131 (91%), Positives = 125/131 (95%) Query: 1 MSGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNM 60 M+GPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGV AL KLRS+ FDFVVSDWNM Sbjct: 1 MAGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVMALSKLRSETFDFVVSDWNM 60 Query: 61 PNMDGLTMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKL 120 PNMDGLTMLQ+IR DPALSKLPVLMVTAEAKKENI+AAAQAGANGYVVKPFTAATLDEKL Sbjct: 61 PNMDGLTMLQQIRADPALSKLPVLMVTAEAKKENIIAAAQAGANGYVVKPFTAATLDEKL 120 Query: 121 GKIFEKMAAGG 131 KIFEK+AA G Sbjct: 121 AKIFEKLAAAG 131 >gi|134094525|ref|YP_001099600.1| chemotactic response regulator [Herminiimonas arsenicoxydans] Length = 121 Score = 86.7 bits (213), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 46/117 (39%), Positives = 68/117 (58%), Gaps = 1/117 (0%) Query: 8 FLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNMPNMDGLT 67 L VDD ++R++V L+ GY V EA DG L K + FD V++D NMP MDG + Sbjct: 5 ILAVDDSGSLRQMVVFSLRAAGY-QVTEAVDGQDGLDKAQMQVFDLVLTDQNMPRMDGFS 63 Query: 68 MLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLGKIF 124 +++ +R P K+P+L++T E+ E AGANG++VKPF L E + K+ Sbjct: 64 LIRALRALPTYQKVPILVLTTESSDEMKAKGRAAGANGWLVKPFDPQRLTEVVKKVI 120 >gi|134095906|ref|YP_001100981.1| putative composite two component regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator protein [Herminiimonas arsenicoxydans] Length = 1969 Score = 73.6 bits (179), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 41/108 (37%), Positives = 61/108 (56%), Gaps = 1/108 (0%) Query: 9 LVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNMPNMDGLTM 68 +VVDD T+RR+ + LL GY V A+DGV ALQ L+S D ++ D MP MDG + Sbjct: 1848 MVVDDSLTVRRVTQRLLTREGY-QVVLAKDGVDALQHLQSVTPDVMLVDIEMPRMDGFDL 1906 Query: 69 LQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATL 116 + IR D +P++M+T+ ++ A + G N Y+ KP+ L Sbjct: 1907 TRNIRDDERTRDIPIIMITSRTASKHRNYAMELGVNEYLGKPYQEEAL 1954 >gi|134095909|ref|YP_001100984.1| twitching motility protein. pilH ortholog [Herminiimonas arsenicoxydans] Length = 121 Score = 69.3 bits (168), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 67/115 (58%), Gaps = 1/115 (0%) Query: 7 KFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNMPNMDGL 66 K L+VDD T R + ++L + G++ V AE+G +AL K+++D+ ++ D MP +G Sbjct: 5 KILIVDDSPTERYFLTDILVKKGFS-VSTAENGEEALLKIKADKPQLILMDIVMPGQNGF 63 Query: 67 TMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLG 121 + + I +DP +P+++ T++ ++ + + + GA Y+VKP A L K+ Sbjct: 64 QITRAITRDPETQDVPIIICTSKGQETDRIWGLRQGARDYIVKPVDPAELLSKIA 118 >gi|134094861|ref|YP_001099936.1| nitrate/nitrite response regulator protein [Herminiimonas arsenicoxydans] Length = 235 Score = 67.4 bits (163), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 3/114 (2%) Query: 1 MSGPNTKFLVVDDFSTMRRIVRNLLKELG-YTNVDEAEDGVQALQKLRSDQFDFVVSDWN 59 ++ P L++DD + R +R+LL+ ++ V EA DGV+ +++ R Q D V+ D N Sbjct: 13 LAPPPISVLLIDDHTLFRSGIRSLLQRYPEFSVVGEAADGVEGIKRARQLQPDVVLLDLN 72 Query: 60 MPNMDGLTMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTA 113 MP + GL LQ + +D V+M+T E++ A Q+GA GY++K A Sbjct: 73 MPGISGLQTLQLMLQD--CPNTAVIMLTVSEDAEDLGVALQSGARGYLIKNIDA 124 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.133 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 228,649 Number of extensions: 7848 Number of successful extensions: 100 Number of sequences better than 1.0e-08: 24 Number of HSP's gapped: 104 Number of HSP's successfully gapped: 24 Length of query: 131 Length of database: 1,000,347 Length adjustment: 72 Effective length of query: 59 Effective length of database: 763,107 Effective search space: 45023313 Effective search space used: 45023313 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 124 (52.4 bits)