BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1880.p
         (290 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094528|ref|YP_001099603.1| glutamate methyltransferase [He...   446   e-127

>gi|134094528|ref|YP_001099603.1| glutamate methyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 300

 Score =  446 bits (1147), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 206/277 (74%), Positives = 244/277 (88%), Gaps = 1/277 (0%)

Query: 14  KEFDFNSRDFERVRGLIYQRAGIALADSKQEMVYSRLARRLRATGITSFQQYLDMLER-T 72
           KEF+F +RDFERVR LIY++AGIALA+SKQEMVYSRLARRLRATGI+SF  YLD LE+ +
Sbjct: 20  KEFEFTARDFERVRALIYKKAGIALAESKQEMVYSRLARRLRATGISSFVTYLDRLEQGS 79

Query: 73  HDADEWEAFTNALTTNLTSFFREAHHFPILADFLKTLKEPATIWCSAASTGEEPYTIAMT 132
            + +EWEAFTNALTTNLTSFFRE+HHFPILA+ LK +KEP  IWCSAASTGEEPY+IAMT
Sbjct: 80  GETEEWEAFTNALTTNLTSFFRESHHFPILAEHLKKVKEPIEIWCSAASTGEEPYSIAMT 139

Query: 133 ACEAYGSMNPPVQIVATDIDTNVLSTGANGVYPMERIEKMSPERVKKFFLRGKGSHEGYV 192
           ACEA+ ++ PPV+I+ATDIDTNVL+TGANGVY ++R++KMSPER ++FFLRGKG+ EG V
Sbjct: 140 ACEAFNTLTPPVRIIATDIDTNVLNTGANGVYSIDRLDKMSPERARRFFLRGKGAREGQV 199

Query: 193 RVRPELRKLITFKQLNLLADSWPISGQFDVIFCRNVMIYFDKPTQSKILSRFVPLMKPHA 252
           RVRPELR++I+FKQ+NLLAD+W +SG FDVIFCRNVMIYFDKPTQ KIL RF PLMKP  
Sbjct: 200 RVRPELRQMISFKQVNLLADNWGVSGPFDVIFCRNVMIYFDKPTQGKILDRFAPLMKPDG 259

Query: 253 LLFAGHSENFLYVSDALKLKGKTVYELNATQRGARTK 289
           LLFAGHSENFLYV D  KL+GKTVYEL+  ++ +  K
Sbjct: 260 LLFAGHSENFLYVCDEFKLRGKTVYELDPDRKTSSAK 296


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 539,155
Number of extensions: 21212
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 209
Effective length of database: 733,452
Effective search space: 153291468
Effective search space used: 153291468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)