BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1879.p (565 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094998|ref|YP_001100073.1| putative methyl-accepting chemo... 706 0.0 gi|134095907|ref|YP_001100982.1| twitching motility transmembran... 102 5e-23 gi|134093834|ref|YP_001098909.1| putative methyl-accepting chemo... 98 8e-22 gi|134093308|ref|YP_001098383.1| putative methyl-accepting chemo... 94 2e-20 gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis pro... 92 5e-20 >gi|134094998|ref|YP_001100073.1| putative methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 550 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/488 (71%), Positives = 408/488 (83%), Gaps = 3/488 (0%) Query: 42 AGQWLGAPGVSCVAVLLGM-IGFALARRGEQSQAGPLVDKISGEIDHIMIGAAETSFFVD 100 AG P + +A L+ + L +RG S+ ++KI EIDHIMIGAAETSFFVD Sbjct: 37 AGDTFALPWLVLMAALVSAGLQELLHQRG--SKNVHFINKIGSEIDHIMIGAAETSFFVD 94 Query: 101 TIKTKIGKDVVAAERIATSAEQNAATTEQIAANAERASSIAAEVRSESVSGRAEVDRGLQ 160 +IK KI +DV AA I +EQNA+TTEQIAANAERAS +AAEVR+ESV+GRAEV+RGL+ Sbjct: 95 SIKNKIAQDVQAANGIVAGSEQNASTTEQIAANAERASQVAAEVRTESVAGRAEVNRGLE 154 Query: 161 QIGQARTDALSASSMMAQLQEKSRRIHGITEVISEIAARTNLLALNAAIEAARAGEQGRG 220 QIG+AR DA +AS MM LQEKSRRIHGITEVISEIAARTNLLALNAAIEAARAGE GRG Sbjct: 155 QIGKARDDAQAASEMMRVLQEKSRRIHGITEVISEIAARTNLLALNAAIEAARAGEHGRG 214 Query: 221 FAVVAGEVRQLAQRTKEATDDIGVMVRAISEEAERAASGMNSLSSRVLEAAQNVEKVHGL 280 FAVVAGEVRQLAQRTKEATDDIG MVRAI+ EAERAA GM +LS +V+EA+QNV +VH Sbjct: 215 FAVVAGEVRQLAQRTKEATDDIGSMVRAINVEAERAAGGMQALSGKVMEASQNVARVHEF 274 Query: 281 LNSIERSASQSQEQIEEIALASREHVQTTQEIAEAITDIRNGMLHTDAELPRVAASAMEL 340 L +IER+AS S+E+I++IA ASREHV+TT IA AI +IR+GML TD ELPRVAASAM L Sbjct: 275 LGNIERAASTSEEEIQQIARASREHVETTHRIAAAILEIRDGMLETDTELPRVAASAMVL 334 Query: 341 SERAEVVFEAIIDGGAHSGHDEIRGAAVEAAQAVGKLFEGAIRAGQITEAALFDRSYTPI 400 SERAEVV++AI + GA + HD IR A EAA +G++F+ AI AG+IT ALFDR Y P+ Sbjct: 335 SERAEVVYDAIAESGADTQHDSIRMIATEAAHQIGRIFDEAIVAGRITREALFDRHYQPL 394 Query: 401 PHTSPQKHSSQFDGFTDRVLPALQEGLLERMPQLAYAGAVDNNGYFPTHNKKFSQPLTGD 460 P+TSP KH++QFD FTDRVLP +QE +L+ MPQLAYAGAVD+NGYFPTHNKKFSQ LTG+ Sbjct: 395 PNTSPPKHTTQFDAFTDRVLPTVQEAILDAMPQLAYAGAVDDNGYFPTHNKKFSQALTGN 454 Query: 461 YDVDLVNNRTKRIFSDRTGKRCGANTKPFLLQTYRRDTGEVMHDLSVPIYVNGKHWGGFR 520 YDVDLVNNRTKRIF+DRTGKRCG+NTKPFLLQTY+RDTGEVMHDLSVPIYV+GKHWGGFR Sbjct: 455 YDVDLVNNRTKRIFTDRTGKRCGSNTKPFLLQTYKRDTGEVMHDLSVPIYVDGKHWGGFR 514 Query: 521 VGYRSSHV 528 +GYRSS V Sbjct: 515 IGYRSSSV 522 >gi|134095907|ref|YP_001100982.1| twitching motility transmembrane protein [Herminiimonas arsenicoxydans] Length = 757 Score = 102 bits (254), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 77/214 (35%), Positives = 121/214 (56%), Gaps = 4/214 (1%) Query: 136 RASSIAAEVRSESVS----GRAEVDRGLQQIGQARTDALSASSMMAQLQEKSRRIHGITE 191 +++S +AEV +SV+ G V+ ++ + + R S + +L E S+ I ITE Sbjct: 531 KSASESAEVARQSVTAAEQGSRAVENAIKGMNEIREQIQETSKRIKRLGESSQEIGEITE 590 Query: 192 VISEIAARTNLLALNAAIEAARAGEQGRGFAVVAGEVRQLAQRTKEATDDIGVMVRAISE 251 +IS+I +TN+LALNAAI+AA AGE GRGF+VVA EV++LA+R+ EAT IG +VR I Sbjct: 591 LISDITEQTNVLALNAAIQAASAGEAGRGFSVVAEEVQRLAERSGEATKQIGALVRTIQT 650 Query: 252 EAERAASGMNSLSSRVLEAAQNVEKVHGLLNSIERSASQSQEQIEEIALASREHVQTTQE 311 + A + M + V+E A+ + L+ I R +++ E I+ I+ A+ + + Sbjct: 651 DTHDAVAAMEKSTQGVVEGAKLSDAAGAALSDIRRVSNRLAELIQGISSATEQQATSANG 710 Query: 312 IAEAITDIRNGMLHTDAELPRVAASAMELSERAE 345 +A+ I I T + A S ELS+ AE Sbjct: 711 VAQNIQGILTVTEQTQEGTQQTAHSIRELSKLAE 744 >gi|134093834|ref|YP_001098909.1| putative methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 700 Score = 98.2 bits (243), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 71/197 (36%), Positives = 114/197 (57%), Gaps = 14/197 (7%) Query: 102 IKTKIGKDVVAAERIATSAEQNAATTEQIAANAERASSIAAEVRSESVSGRAEVDRGLQQ 161 + T+ + + E+ + + E+ +T +Q AA+A++A+ +A ++ SG AE Q Sbjct: 423 LSTRTEEQASSLEQTSAAMEELTSTVKQNAAHAQQANRLA-----KTASGIAE------Q 471 Query: 162 IGQARTDALSASSMMAQLQEKSRRIHGITEVISEIAARTNLLALNAAIEAARAGEQGRGF 221 G A + + M +Q+ SR I I V+ IA +TN+LALNAA+EAARAGEQGRGF Sbjct: 472 GGSAVSQVVDT---MQAIQQSSREISDIIGVVDSIAFQTNILALNAAVEAARAGEQGRGF 528 Query: 222 AVVAGEVRQLAQRTKEATDDIGVMVRAISEEAERAASGMNSLSSRVLEAAQNVEKVHGLL 281 AVVA EVR LAQR+ A +I V++ A E+ E + +N+ + + Q++ V ++ Sbjct: 529 AVVAAEVRNLAQRSAVAAKEIKVLIAASVEKVEAGSKQVNAAGKTMDQIVQSITHVTTIM 588 Query: 282 NSIERSASQSQEQIEEI 298 I ++++ Q IE I Sbjct: 589 AEITAASAEQQSGIEHI 605 >gi|134093308|ref|YP_001098383.1| putative methyl-accepting chemotaxis sensory transducer [Herminiimonas arsenicoxydans] Length = 633 Score = 93.6 bits (231), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/203 (36%), Positives = 110/203 (54%), Gaps = 18/203 (8%) Query: 176 MAQLQEKSRRIHGITEVISEIAARTNLLALNAAIEAARAGEQGRGFAVVAGEVRQLAQRT 235 M + + S++I I VI IA +TN+LALNAA+EAARAGEQGRGFAVVA EVR LAQR+ Sbjct: 335 MDSINQSSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRS 394 Query: 236 KEATDDIGVMVRAISEEAERAASGMNSLSSRVLEAAQNVEKVHGLLNSIERSASQSQEQI 295 A +I ++ E + S + S S V A +++V ++SI+R + Sbjct: 395 SAAAREIKTLI-------EDSVSKVQSGSKLVAHAGATMDEV---VSSIQR----VDNIM 440 Query: 296 EEIALASREHVQTTQEIAEAITDIRNGMLHTDAELPRVAASAMEL----SERAEVVFEAI 351 EI+ ASRE +++ +AI + A + + AASA L +E VV Sbjct: 441 GEISSASREQSIGIEQVNQAIAQMDQVTQQNAALVEQAAASAESLQNQTTELNNVVSVFT 500 Query: 352 IDGGAHSGHDEIRGAAVEAAQAV 374 I G+H DE + ++A +A+ Sbjct: 501 IKSGSHGATDEAQEMVIKAIEAM 523 >gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 573 Score = 92.4 bits (228), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 68/200 (34%), Positives = 110/200 (55%), Gaps = 14/200 (7%) Query: 112 AAERIATSAEQNAATTEQIAANAERASSIAAEVRSESVSGRAEVDRGLQQIGQARTDALS 171 A E A+S E+ +T +Q A N+++AS++A S ++ G A V + + +G Sbjct: 302 ALEETASSMEEITSTVKQNAENSQQASTLAVHASSTAIRGGAVVSQVVDTMGS------- 354 Query: 172 ASSMMAQLQEKSRRIHGITEVISEIAARTNLLALNAAIEAARAGEQGRGFAVVAGEVRQL 231 + E SR+I I VI IA +TN+LALNAA+EAARAGEQGRGFAVVA EVR L Sbjct: 355 -------ITESSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSL 407 Query: 232 AQRTKEATDDIGVMVRAISEEAERAASGMNSLSSRVLEAAQNVEKVHGLLNSIERSASQS 291 AQR+ A +I ++ E+ + + + + + E +++V +++ I + + Sbjct: 408 AQRSASAAKEIKQLIGDSVEKVDAGSKLVEQAGTTMKEIVGGIQRVADIMSDITAAGREQ 467 Query: 292 QEQIEEIALASREHVQTTQE 311 IE++ A + + TQ+ Sbjct: 468 SAGIEQVNQAIAQMDEVTQQ 487 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.129 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 766,173 Number of extensions: 28481 Number of successful extensions: 170 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 162 Number of HSP's successfully gapped: 13 Length of query: 565 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 478 Effective length of database: 713,682 Effective search space: 341139996 Effective search space used: 341139996 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)