BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1877.p
         (314 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094815|ref|YP_001099890.1| cobalt-zinc-cadmium resistance ...   110   1e-25
gi|134093788|ref|YP_001098863.1| cation efflux protein CzcD [Her...   100   1e-22

>gi|134094815|ref|YP_001099890.1| cobalt-zinc-cadmium resistance
           protein czcD [Herminiimonas arsenicoxydans]
          Length = 304

 Score =  110 bits (274), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 151/304 (49%), Gaps = 36/304 (11%)

Query: 20  RNTRRTLWVVALTAVMMVAEIAAGYFTGSMALLADGFHMATHTGALAIAAGAYVFARRHA 79
           +N +  L  + LT+  ++AE+ AG+ TGS+ALL+D  HM T   ALAIA  A    +R A
Sbjct: 13  QNQKYLLIALGLTSTFLIAEVVAGFITGSLALLSDAAHMLTDASALAIALVAIQIGKRPA 72

Query: 80  HDSRFSFGTGKVGDLAGFASALVLAVIAVGIGGESLWRLASPDTVNFGEAIPIAVVGLIV 139
            D R +FG  +   LA   +A++L ++A+ I  E+  R  SP  +     + +A +GL++
Sbjct: 73  -DKRRTFGYLRFEILAAAFNAILLFLVAMYILYEAYQRFRSPIEIESTGMLIVASLGLVI 131

Query: 140 NIASALLLMEGHHDHHAHGHHAHDEHEHTHHQDHHHVGHDNNLRSAYLHVVADALTSVLA 199
           N+ S  LL  G                              N++ AYL V +D L SV  
Sbjct: 132 NLISMKLLSAGKDS-------------------------SLNIKGAYLEVWSDMLGSVGV 166

Query: 200 IAALLAGLYLGWTWLDPLMGV-VGAVVIARWSYSLLRTSAGVLLD-MTDAQVAARIEQAL 257
           I   L   + GWTW+D ++ V +G  V+ R ++ LLR S  VLL+ + +     +++Q+L
Sbjct: 167 IIGALVIRFTGWTWVDSVIAVGIGFWVLPR-TWVLLRESINVLLEGVPEGMDLEKLQQSL 225

Query: 258 AS-QEVQ-IDDLHVWRIGPSARAAIVSVSTSTA-----VTEGQLRHKLAGLGELHHLTLE 310
                VQ + DLHVW I     +  + V +  +     V    ++  LA   E+HH T++
Sbjct: 226 LEIPSVQSVHDLHVWSISSGKVSLTMHVVSEDSENLHPVLIATIQSVLAEQFEIHHTTIQ 285

Query: 311 LRQR 314
           + ++
Sbjct: 286 IEKQ 289


>gi|134093788|ref|YP_001098863.1| cation efflux protein CzcD
           [Herminiimonas arsenicoxydans]
          Length = 298

 Score =  100 bits (248), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 157/316 (49%), Gaps = 38/316 (12%)

Query: 6   SYRHEHIYLGTNHDRNTRRTLWVVALTAVMMVAEIAAGYFTGSMALLADGFHMATHTGAL 65
           S  H H+  GT    N R  L  +ALT+  ++AE+  G+ TGS+AL++D  HM T + AL
Sbjct: 2   STEHSHVAAGTG---NERALLIALALTSCFLIAEVIGGFITGSLALISDAAHMFTDSAAL 58

Query: 66  AIAAGAYVFARRHAHDSRFSFGTGKVGDLAGFASALVLAVIAVGIGGESLWRLASPDTVN 125
           AIA  A    +R A+  R +FG  +   LA   +A++L  +A+ I  E+  R  +P  + 
Sbjct: 59  AIALVAIKVGKRLANKKR-TFGYYRFEILAAAVNAILLFAVAIYIIFEAYQRFKNPPEIQ 117

Query: 126 FGEAIPIAVVGLIVNIASALLLMEGHHDHHAHGHHAHDEHEHTHHQDHHHVGHDNNLRSA 185
               + IA+ GL +N+ S + ++ G  D+                          N++ A
Sbjct: 118 SMGMLAIAIAGLCINLIS-MRILSGGKDNSI------------------------NMKGA 152

Query: 186 YLHVVADALTSVLAIAALLAGLYLGWTWLDPLMGV-VGAVVIARWSYSLLRTSAGVLLD- 243
           YL V +D L S+  I   L   + GW+W+D ++ V +G  V+ R ++ LL  S  +LL+ 
Sbjct: 153 YLEVWSDMLGSIGVIVGALVIGWTGWSWVDSVIAVAIGLWVLPR-TWKLLSDSLNILLEG 211

Query: 244 MTDAQVAARIEQA-LASQEVQ-IDDLHVWRIGPSARAAI---VSVSTSTAVTEGQLRHKL 298
           + +      IEQA LA   V+ I DLHVW I  S + ++   V    +  V    ++  L
Sbjct: 212 VPEGTDLTAIEQATLALPGVKSIHDLHVWAIS-SGKVSLTMHVISEENANVLLKAIQLML 270

Query: 299 AGLGELHHLTLELRQR 314
               E+HH T++L Q+
Sbjct: 271 IEKFEIHHTTIQLEQQ 286


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.133    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 482,891
Number of extensions: 17665
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 4
Length of query: 314
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 232
Effective length of database: 730,157
Effective search space: 169396424
Effective search space used: 169396424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 128 (53.9 bits)