BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1872.p
         (286 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096412|ref|YP_001101487.1| hypothetical protein HEAR3259 [...   125   2e-30

>gi|134096412|ref|YP_001101487.1| hypothetical protein HEAR3259
           [Herminiimonas arsenicoxydans]
          Length = 258

 Score =  125 bits (315), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/274 (36%), Positives = 144/274 (52%), Gaps = 28/274 (10%)

Query: 17  RRRTALGIVSSVLVHAAVFLFVRAKLNEAPPRLDSPGR-PDAPLQVSLIRPPAPAPVAQP 75
           R RTA+GI  S+L+HA +  F    ++ A  R+   G  P APL V+LI           
Sbjct: 2   RARTAIGIGLSLLIHALILFFA---MDRAEVRVAETGESPTAPLTVNLI----------A 48

Query: 76  EPPKPAPEPKKVEPPRKKTVAKPLARHSAPTRQAVPQRQPLPVAPTPSSNPPTTAAAPAD 135
           + P P      + PP +KT +   A   A + +  P  +  P  P   ++  T    P  
Sbjct: 49  QAPSPKVAAATLAPPPQKTDSTKPAHKKAGSAKTEPATRAKPPPPPSPTSTATALLPP-- 106

Query: 136 DFMTFTNRNRQKREEAEQAAAQE--NAAARAAENPSANDIARANIAF---QDRRGRG-TN 189
                T+     R     A  QE  N+ ++ A++   N IARANIA    Q  RGR  + 
Sbjct: 107 ---DMTDMLNAARARRRAAGIQEPDNSVSQPADD---NAIARANIAELTQQQSRGRNESG 160

Query: 190 GVFQIISMGPRVAQYSFRGWTTDQRRSQNQLIEVDAGFGGNVQLAVVNSMIALIRRYYQG 249
           GVFQ+   G R A++ FRGW   +R +  QLI VDAG  G+++ A+V  MI LIR+Y +G
Sbjct: 161 GVFQVTYKGVRSAEFIFRGWDLRRRTNSRQLILVDAGPNGDIETAIVRRMIELIRQYEKG 220

Query: 250 DFNFDSQRLGRVVTLSARLEDTKGLQNFLLNEFF 283
           DF ++S R+GRVVTLSAR +D+  L++FL  +FF
Sbjct: 221 DFQWNSPRIGRVVTLSARPQDSAELEDFLKRDFF 254


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 367,465
Number of extensions: 11155
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 205
Effective length of database: 733,452
Effective search space: 150357660
Effective search space used: 150357660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)