BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1868.p
         (426 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095662|ref|YP_001100737.1| CTP:CMP-3-deoxy-D-manno-octulos...   164   9e-42
gi|134096260|ref|YP_001101335.1| 3-deoxy-D-manno-octulosonate 8-...   116   2e-27

>gi|134095662|ref|YP_001100737.1|
           CTP:CMP-3-deoxy-D-manno-octulosonate transferase
           [Herminiimonas arsenicoxydans]
          Length = 250

 Score =  164 bits (415), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 110/248 (44%), Positives = 139/248 (56%), Gaps = 16/248 (6%)

Query: 1   MHCIAVIPARFGSSRLPGKPLADILGKPMIQHVYERVRSLDELADVVVATDDERIVAAVN 60
           M    +IPAR  S+RLP KPLAD+ GKPMI  V ER       + V+VATD   I AA  
Sbjct: 1   MSFTVIIPARLASTRLPNKPLADLGGKPMIVRVAERAME-SGASRVIVATDHADIFAACA 59

Query: 61  AFGGKALLTSPHHPSGTDRLREV---MQHHPADLYLNVQGDEPLVNPTHLRSLLQAMLAA 117
                  +T   HPSGTDR+ EV   +      + +NVQGDEPL++P+ + +   A L +
Sbjct: 60  QNNVAVQMTRTDHPSGTDRIAEVAAVLGLSDDAVIVNVQGDEPLIDPSLIAA--TATLIS 117

Query: 118 PQVQAGTLCHAIT-AGEAENPNTVKVVRNRAGDALYFSRARIPFERESSGKARY------ 170
            +V   T  H I    +A NPN VKVV ++ G ALYFSRA IP+ R+   ++R       
Sbjct: 118 REVPMATAAHTIDDIADAFNPNVVKVVLDKQGRALYFSRATIPWHRDGFAQSREQLPTAY 177

Query: 171 --FKHIGVYAYRAELLAAFPGLPPSELEGAEMLEQLRIMDAGWQIRVIEVDHA-APGVDT 227
              +HIG+YAYR   L A+P L  S LE  E LEQLR++  G  I V    HA A GVDT
Sbjct: 178 APLRHIGLYAYRNSFLQAYPQLAVSPLEQIEALEQLRVLWHGVPIAVHVTPHAPAAGVDT 237

Query: 228 PACLERVR 235
           P  L RVR
Sbjct: 238 PEDLLRVR 245


>gi|134096260|ref|YP_001101335.1| 3-deoxy-D-manno-octulosonate
           8-phosphate phosphatase [Herminiimonas arsenicoxydans]
          Length = 179

 Score =  116 bits (291), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/155 (43%), Positives = 91/155 (58%), Gaps = 2/155 (1%)

Query: 252 ADVKLVITDIDGVLTDGGIWYDDSGECLKRFHVRDGMGIKMLQEAGVNVAVISGRDSATL 311
           ++V+L+I D+DG+LTDG + +   GE +K F+V DG GIK+LQ++GV  A+IS R S  +
Sbjct: 14  SNVRLMIFDVDGILTDGSLHFGADGEVIKTFNVLDGHGIKLLQQSGVATAIISARQSPIV 73

Query: 312 RRRLADLGI-TVFQLGAKDKAGACRAIMEQFQVGPEATAMIGDDSIDLPGFAACAWPVAV 370
            RR  DLGI  VFQ G  DK  A   ++ Q  V   A   IGDD IDLP  +   +  +V
Sbjct: 74  LRRATDLGIHHVFQ-GIHDKRTAFEQLLTQTGVAATACGFIGDDVIDLPILSRVGFAASV 132

Query: 371 DDAPDYVKRHARVVLTKAGGQGAFREFSDSVLNAQ 405
            +A   V+     V    GG+GA RE  D +L AQ
Sbjct: 133 PNAHPEVRTRVHYVTQAGGGRGAARELCDFILRAQ 167


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 855,372
Number of extensions: 37647
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 2
Length of query: 426
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 342
Effective length of database: 723,567
Effective search space: 247459914
Effective search space used: 247459914
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)