BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1867.p
         (315 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096259|ref|YP_001101334.1| D-arabinose 5-phosphate isomera...   259   1e-70

>gi|134096259|ref|YP_001101334.1| D-arabinose 5-phosphate isomerase
           [Herminiimonas arsenicoxydans]
          Length = 342

 Score =  259 bits (663), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 143/312 (45%), Positives = 200/312 (64%), Gaps = 8/312 (2%)

Query: 9   FQEQAQALNMIAERLADE----FEQAVELMYATRGRVIVSGMGKSGIIGSKIAATLASTG 64
            Q +A A+  + +R+++E    F QAV L+    GRV+VSG+GKSG I  KIA+TLASTG
Sbjct: 29  LQIEADAILALKQRISNESGEQFIQAVALLLNCTGRVVVSGIGKSGHIARKIASTLASTG 88

Query: 65  TSSFFVHPGEAYHGDLGMFTEADTAILISYSGETEEVIRLIPSLRHFGLRIIAIVGKRNS 124
           T + FVH  EA HGDLGM T  D  I ISYSGE  E++ ++P ++  G  +I I G  +S
Sbjct: 89  TPALFVHAAEASHGDLGMITADDALIAISYSGEAGELVAIVPIIKRMGATLITITGNDDS 148

Query: 125 TLGKNADVVLDVSVPREACPNNLAPTTSTTATLVMGDALAVALIEKRDFKPNDFARFHPG 184
           TL + ADV L+V V +EACP NLAPT STTATL +GDALAVAL++ R F   DFAR HPG
Sbjct: 149 TLAQLADVHLNVRVDKEACPLNLAPTASTTATLAIGDALAVALLDARGFGEEDFARSHPG 208

Query: 185 GSLGKRLLTRVKDVMHT--QVPWVMRETPIIDVIGQMTEGGLGMALVSADDSRQTLCGVI 242
           G+LG+RLLT V+DVM T   +P V ++  +   + +++    GMA+ +  D+     GV 
Sbjct: 209 GALGRRLLTHVRDVMRTGDAIPTVGKDASLYTALLEISRK--GMAMTAVVDAGGRAIGVF 266

Query: 243 TDGDLRRALAARKDIYHITAADLMNTSPKTVPENEMFVDAETKMLELNITALVALNEAQH 302
           TDGDLRR +  ++D   ++ A++M+ +P++V  +++ VDA   M E  I  L+  N    
Sbjct: 267 TDGDLRRLIENQRDFSTLSIAEVMHANPRSVQPDQLAVDAVKMMEEFRINQLLVTNADGK 326

Query: 303 VVGVLKLLDAKR 314
           +VG L + D  R
Sbjct: 327 LVGALHIHDLTR 338


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 544,731
Number of extensions: 21574
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 233
Effective length of database: 730,157
Effective search space: 170126581
Effective search space used: 170126581
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)