BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1866.p
         (279 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093724|ref|YP_001098799.1| 2-dehydro-3-deoxyphosphooctonat...   421   e-119

>gi|134093724|ref|YP_001098799.1| 2-dehydro-3-deoxyphosphooctonate
           aldolase [Herminiimonas arsenicoxydans]
          Length = 280

 Score =  421 bits (1083), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/277 (74%), Positives = 232/277 (83%)

Query: 1   MIKINDIEVGNELPFVLFGGINVLESEQFAVDVCGEYVRITKELGIPYVFKASFDKANRS 60
           MIKI DI+V N LPFVLFGGINVLES   A+  C EYVR+T++LGIPYVFKASFDKANRS
Sbjct: 1   MIKIGDIKVDNALPFVLFGGINVLESRDLAMKSCEEYVRVTQKLGIPYVFKASFDKANRS 60

Query: 61  SIKSYRGPGLEAGLKIFEAVKKAHGVPVLTDVHEPYQAAEVASVCDVLQLPAFLARQTDL 120
           SI SYRGPGLE G++IFE VKK   VPV+TDVHE +QA  VA V DVLQLPAFLARQTDL
Sbjct: 61  SIHSYRGPGLEEGMRIFEEVKKTFNVPVITDVHEVHQAEIVAEVADVLQLPAFLARQTDL 120

Query: 121 VIALAKTGKVINIKKPQFVSPPQMKNIVEKFEEGGNTNVMLCDRGAQFGYDNLVVDMLGF 180
           V+ALAKTG VINIKKPQF+SP QM NIVEKF+E GN  ++LCDRG  FGYDNLVVDMLGF
Sbjct: 121 VVALAKTGSVINIKKPQFLSPSQMMNIVEKFKEAGNEQLILCDRGTCFGYDNLVVDMLGF 180

Query: 181 GVMKQVSGNKPVIFDVTHALQQRESGAAASGGRRGQVTELARAGMALGLAGLFLEAHPDP 240
           GVMK+V  N P+IFDVTHALQQR+ G AASGGRR QV +LARAGM++GLAGLFLEAHPDP
Sbjct: 181 GVMKKVCNNLPIIFDVTHALQQRDPGGAASGGRREQVADLARAGMSVGLAGLFLEAHPDP 240

Query: 241 SKALCDGPSALRLSQLKPFLEQVKAVDELVKNLPELD 277
             A CDGPSAL L +L+PFL Q+K +D+LVK+   LD
Sbjct: 241 KSAKCDGPSALPLDKLEPFLAQLKQLDDLVKSFAPLD 277


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.137    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 451,093
Number of extensions: 15911
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 198
Effective length of database: 733,452
Effective search space: 145223496
Effective search space used: 145223496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)