BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1865.p
         (477 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093976|ref|YP_001099051.1| hypothetical protein HEAR0730 [...    95   8e-21

>gi|134093976|ref|YP_001099051.1| hypothetical protein HEAR0730
           [Herminiimonas arsenicoxydans]
          Length = 481

 Score = 94.7 bits (234), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 112/445 (25%), Positives = 196/445 (44%), Gaps = 17/445 (3%)

Query: 27  VLTRLIAPSEYGLMAMAGVATNLAFVLRDMGTAAAIIQKAEISQADTSSVFWLNMAGGTL 86
           ++TR++ P+++G +A A     L  ++  +G   A+IQ+  I      S FW+++  G  
Sbjct: 28  IMTRVLTPADFGSVAFAQSIVVLTQLVIGLGINEALIQRRPIDMLHIDSAFWMSILLGLS 87

Query: 87  LMVLLFGTAPLLSATFHEPRLTEVLWILSLSFPIAASSTVHQALLERVSRFRLVAGIEST 146
             V    T         +P +  +L     +      + +  A+L+R  R + +A    T
Sbjct: 88  GFVFCLLTGLYFIYFMQQPLVGTILIAEGSACLFTGLNLLPSAMLDRKLRTKAIARRTVT 147

Query: 147 SSLLALLIALLLAYRGLGVWSLIAQALLMAACTTLLMWWFSPFRPKAIFDREALRG--VF 204
             L   L+A+ LA  G GVWS++A  ++     TL+ W     +P   F     R   VF
Sbjct: 148 GKLSYCLVAIGLAVAGFGVWSIVAAGIVQNILLTLIFWRGHKRKPLRRFSWTHARQLIVF 207

Query: 205 KFSGSMAGHQLASYLFRNADSFIVGKMLGVTVLGNYSLAYKLMLFPVQNISWVAVRSLFP 264
            F   + G  L ++L R   S ++G M G+++LG  S+A+K        +  VA R   P
Sbjct: 208 GFPVMLEG-ALWAFLTR-VFSLLIGAMHGLSMLGFVSVAFKATDALSNIVGSVAGRIGLP 265

Query: 265 VMSRRQDDKPYMAALTLRSLKLVSFISAPLMFGVAGVSDLFVDAFLGPKWGLVGGILTFL 324
           + S  Q D+  + +  ++  ++++F+S P+  G+A  +  +V   LG KW     ++  L
Sbjct: 266 LFSSMQKDRERLQSSFMQVTEVMAFVSTPVFVGLALTTGQWVPLLLGDKWSEAIPMIVIL 325

Query: 325 AMVGYVQVISSIASPVLMALGKSDWLFRMSMVGTPLHIAAYIIGALLDGARGLSIAYLVA 384
            +V  +       SP L ALG    L   ++  +   IAA  + A        S  Y++A
Sbjct: 326 CLVWAISFTRVFVSPYLRALGYPRALLLPAVCASACTIAAVFLTA------NQSAIYIIA 379

Query: 385 A----ILMAIP-GFYLSGKVLSIKLSDVIVSLLPSALSGLAMAVLLHYARHYLPHYSGHL 439
           A    + +  P G YL  K   I     +  LL      L MA  +  A+  +       
Sbjct: 380 AWSCRVAVTYPLGLYLLRKYAHISFRRQLQPLLTPFFCVLVMAACVEAAQMAIARAGWSN 439

Query: 440 LFAMLVGM--GILFWAITVVLFQRR 462
           L  +++ M  G++ +A  V+L  R+
Sbjct: 440 LAVLMLSMTVGVISYAAVVLLMYRK 464


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.329    0.139    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 816,647
Number of extensions: 32264
Number of successful extensions: 188
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 392
Effective length of database: 720,272
Effective search space: 282346624
Effective search space used: 282346624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)