BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1862.p
         (475 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093974|ref|YP_001099049.1| GDP-mannose pyrophosphorylase [...   584   e-168

>gi|134093974|ref|YP_001099049.1| GDP-mannose pyrophosphorylase
           [Herminiimonas arsenicoxydans]
          Length = 436

 Score =  584 bits (1505), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 287/436 (65%), Positives = 350/436 (80%)

Query: 40  MLQETVARVGSWPEVQAPLIVCGNEHRFMIAEQLREIGVRPLGIMLEPQGRNTAPAVAAA 99
           MLQETV RV  WPE+  PLIVCG++HRF++AEQLR+I  +P  I+LE +GRNTAPAVAAA
Sbjct: 1   MLQETVLRVAGWPEIAPPLIVCGDDHRFLVAEQLRQIDSKPTAILLEAEGRNTAPAVAAA 60

Query: 100 ALHLQRLDPEALMLVLPADHVITDVLAFHEAVRRALVSVQQGALATFGIEPTQPETGYGY 159
           A +L   DP+ALMLVLPADH+I D  AFHEAV  A  +V + ALATFGI P+  ETGYGY
Sbjct: 61  ANYLLARDPDALMLVLPADHLIIDADAFHEAVLVAAHAVGKHALATFGILPSAAETGYGY 120

Query: 160 ILRGAAHGTDSGNFLVERFVEKPDLATATGFLQQGGYYWNSGMFLFKARDYLAELEVHRP 219
           I RGAA       F VERFVEKPDLATA  FL    Y WNSGMFLF+A  YLAELE  +P
Sbjct: 121 IRRGAAIDRSETCFAVERFVEKPDLATAQAFLADERYSWNSGMFLFRADTYLAELERLQP 180

Query: 220 LIGAAVKEAVAKAYNDLDFCRLDETSFVASPSESIDYAVMENTARAVVVPASIGWSDVGS 279
            + A  K AV  AY+DL FCRL E ++ A PS+SID+AVME+T +A+V+PA IGWSD+GS
Sbjct: 181 EMAACSKAAVQDAYSDLSFCRLHEAAYAACPSQSIDFAVMEHTQQAIVIPADIGWSDIGS 240

Query: 280 WSALHEVLPADAEGNVVRGDVHLNQVKNTLVRAESRMVAVLGVEDLVVVETDDVVLVAHR 339
           WSAL E+   +A+GNV++GDV+ + V+N+L+RAESR V+V+G++++VVVET D VL+ ++
Sbjct: 241 WSALSEMQDGNAQGNVLQGDVYADNVQNSLIRAESRFVSVIGLDNVVVVETRDAVLIVNK 300

Query: 340 DKVQEVKAFVDKLKNTQRTEHVHHKRVFRPWGSYESVDAGERFQVKRIIVKPGEKLSLQM 399
           D+VQ VK  VD LK   R EH++H RV+RPWGSYE +DAGERFQVKRI V PGEKLSLQM
Sbjct: 301 DQVQRVKNVVDFLKQKNRCEHLNHTRVYRPWGSYEPIDAGERFQVKRITVDPGEKLSLQM 360

Query: 400 HYHRAEHWVVVSGSALVTRGEEVTLLSENESIYLPIGVTHRLENPGKLPLHLIEVQSGSY 459
           H+HRAEHWVVV+G+A +T GE V LL+ENESIY+PIG+THRLENPGK+PLHLIEVQSG+Y
Sbjct: 361 HHHRAEHWVVVTGTARITCGETVRLLTENESIYIPIGMTHRLENPGKMPLHLIEVQSGAY 420

Query: 460 LGEDDIVRFEDVYKRA 475
           LGEDDIVRF+DVY+RA
Sbjct: 421 LGEDDIVRFDDVYQRA 436


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 862,383
Number of extensions: 34632
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 390
Effective length of database: 720,272
Effective search space: 280906080
Effective search space used: 280906080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)