BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1860.p
         (357 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093971|ref|YP_001099046.1| putative N-acetylglucosaminyldi...   357   e-100

>gi|134093971|ref|YP_001099046.1| putative
           N-acetylglucosaminyldiphosphoundecaprenol
           N-acetyl-beta-D-mannosaminyltransferase [Herminiimonas
           arsenicoxydans]
          Length = 354

 Score =  357 bits (915), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/344 (53%), Positives = 236/344 (68%), Gaps = 5/344 (1%)

Query: 12  VRITGTAVERRQRCFLSTPNLNFAIACLEDPQFRLSVIQSDLSIADGMPLIWIARAIGLP 71
           V+IT  A    QRCF STPNLNFA+A L+  +FR SVI+SDLS+ADGMPL+WIA+ +GLP
Sbjct: 2   VKITDAA-RSHQRCFFSTPNLNFAVASLDGGEFRDSVIRSDLSVADGMPLVWIAKLLGLP 60

Query: 72  INERVAGSSLFQALRLATLPAGAKPMRVYFFGGPPGVAQAASEKLNASASGMTAVGFDSP 131
           I ERVAGS+LF+ALR   +    K + VYFFGGP GVA+ A++KLN +ASG+  VG  SP
Sbjct: 61  ITERVAGSTLFEALRHRPV----KVLLVYFFGGPDGVAEIAAKKLNTTASGLICVGHKSP 116

Query: 132 GFGSIEQMSDAASIERINASGADFLVVALGAKKGQAWIQHNLSRLRVPLISHLGAVVNFV 191
           GF S+E+MS  A I+ IN S ADFLVVALGAKKGQAWI+HNL RL+VP++SHLGAVVNFV
Sbjct: 117 GFASVEEMSSDAVIDDINDSKADFLVVALGAKKGQAWIEHNLPRLQVPVVSHLGAVVNFV 176

Query: 192 AGTVSRAPTWAQKSGLEWLWRIKEEPKLWRRYWDDGIGLLSLLLQRVIPLALAARRSAPG 251
           AGTV RAP W  + G EWLWRIKEEP LW+RY++DG  LL L+   VIP A+A R     
Sbjct: 177 AGTVKRAPAWIGRLGGEWLWRIKEEPALWKRYFNDGTSLLKLMTLHVIPCAVAMRLHKRD 236

Query: 252 PAQFDGALLQLQEEDGNCILKLSGALGQPNIQRLRTLLPAAASAAHPLVLDCTGLEYLDS 311
                 A + L  +  +CI+  SGA  + N+  LR +  +A +    + LD T + Y+DS
Sbjct: 237 NTAMANARVSLAVQGSDCIIAASGAWEEGNLGALREVFASATARPFHIRLDFTDVTYIDS 296

Query: 312 AALASLMLLYGACHASGRSWTMRGVSQSLRHQLESHCAQYLLAS 355
           A +A LMLL+G     G  +++  V  +++  L   CA YL+ S
Sbjct: 297 ACMALLMLLFGHQSKIGYEFSISNVQPAVQRLLHLFCADYLITS 340


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 654,364
Number of extensions: 26318
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 274
Effective length of database: 726,862
Effective search space: 199160188
Effective search space used: 199160188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)