BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1859.p
         (396 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093970|ref|YP_001099045.1| glycosyl transferase family pro...   367   e-103

>gi|134093970|ref|YP_001099045.1| glycosyl transferase family
           protein [Herminiimonas arsenicoxydans]
          Length = 395

 Score =  367 bits (942), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/398 (49%), Positives = 259/398 (65%), Gaps = 12/398 (3%)

Query: 5   LLQTMLLLILALLAVPVLVLLVQVLSARWVAPCAVAMSAARPRIAVLVPAHNEAGGIGEV 64
           LL   L+++LAL  +PV VLLVQ L+A          +  RP +AVLVPAHNEA GI   
Sbjct: 4   LLHIALIIVLALAVIPVAVLLVQALAALKQTRVMAIATHWRPSVAVLVPAHNEAQGIAAT 63

Query: 65  VAGIVAQLGQADRVLVVADNCGDETAPIARAAGAEVTERSHAELRGKGYALDHGIKHLAA 124
           +A I  QL   DR+LVVADNC D+T  +A AAGA V ERS+ E RGKGYALD+G++HLA 
Sbjct: 64  IASIREQLRDGDRILVVADNCSDDTVAVALAAGAPVLERSNLEQRGKGYALDYGVRHLAH 123

Query: 125 DAPEVVIIVDADCYLAEQALEKLARACVQSGRPVQALYLMHAPEGGGPMRKIAEFAWLVK 184
             PEVVI++DADC L E A+++LA   + + RPVQ L LM A +      +IAEFAW+VK
Sbjct: 124 SPPEVVIMIDADCRLLEGAVDRLACLAMTAQRPVQGLDLMQARKNSHLKMRIAEFAWIVK 183

Query: 185 NLVRPLGFQKLGQPCQLMGTGMAFTWPQISQADLATGHIVEDMKLGVDLAEAGQPPLFCP 244
           N VRPLGF +LG PCQLMGTGMAF W  I +A LA G++ EDM+LG+++A     P+FCP
Sbjct: 184 NHVRPLGFLRLGLPCQLMGTGMAFPWSLIEKAGLANGNLAEDMQLGIEMARKNAAPIFCP 243

Query: 245 EAVVYSYFPSSDSGVSTQRTRWEHGHLSVI-QTYVPRLLGGAFKRGNGALAALALDLSVP 303
           +A V SYFP  +     QRTRWEHGH+S+I    +P L+ G  +R +  L ALALD+ VP
Sbjct: 244 DACVISYFPVGEEAARLQRTRWEHGHMSMILHDGLPLLIQG-LRRSDRMLIALALDMCVP 302

Query: 304 PL-----ALLVMLVVAAWCGNLLIWLVLGLSWPLLVSSLLLLAIGASVLLAWGGYGRKVI 358
           P+         + +VAA    +  W+      PL++++  L  +  +VLLAW  +GR V+
Sbjct: 303 PVALLTLLTFALFIVAAAAYFMFAWIA-----PLILAACSLSGLMLAVLLAWRRFGRYVL 357

Query: 359 SLAELLGAFGYMARKLPLYFKFLFNRQVAWVRSKRDSE 396
           SL +L     Y+  KLPLY KF  +RQV WVR+KRD++
Sbjct: 358 SLKDLFSTVTYVFWKLPLYLKFFVSRQVEWVRAKRDAD 395


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 599,592
Number of extensions: 22812
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 312
Effective length of database: 723,567
Effective search space: 225752904
Effective search space used: 225752904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)