BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1858.p
         (467 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093967|ref|YP_001099042.1| hypothetical protein HEAR0721 [...   505   e-144

>gi|134093967|ref|YP_001099042.1| hypothetical protein HEAR0721
           [Herminiimonas arsenicoxydans]
          Length = 476

 Score =  505 bits (1300), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 249/454 (54%), Positives = 316/454 (69%), Gaps = 3/454 (0%)

Query: 17  LTALISTAPVWAQ---EWGTYLKPFAADSLWNSRPVNPVFDTFVIPTDAYFPTVTTNTYS 73
           L  L+   PV A    +WGTY KPFAA S WNSRPV PVFD FVIP   Y P V    +S
Sbjct: 23  LVGLLFAVPVHAADAAQWGTYGKPFAATSPWNSRPVAPVFDDFVIPASTYKPGVAGGVWS 82

Query: 74  TGIFLASPNDPPVTVTGLTGSKGLFHTDDENYHDITIPHWPAAARAAPGTDGHADIVDPT 133
           TG+FLA   D PVTVTGL  ++GL+  D E +HD+T+P WPA   AA  +DGHADIVDP 
Sbjct: 83  TGVFLAHAGDAPVTVTGLPKTQGLWDPDAEAFHDVTVPRWPADVVAASASDGHADIVDPV 142

Query: 134 TGIVHSFFKLKQEGTQWTAAMYAWTKIDGRGWPDPGHYYQGARATGVPAAAGIIRIHEAA 193
           TGIVHSF++LK+   +W AA YAWT++DGRGW DP  Y+QGARA GVP AAG+IR HE  
Sbjct: 143 TGIVHSFWQLKKVDGKWVAAQYAWTRLDGRGWGDPAQYFQGARAAGVPTAAGLIRKHEIN 202

Query: 194 QKPQYYPHALAMSLTYSGLSPKPAYVFPATSADTEAATRNKGGIPEGSLVMLPPDFDTSK 253
                Y HALAMSLTY+ LSP P Y+FPATSADT+AA  N G IPEG+L+MLP  +DT K
Sbjct: 203 DGDTMYRHALAMSLTYNALSPNPTYIFPATSADTDAAKTNTGRIPEGALMMLPASYDTQK 262

Query: 254 LTNAEVRRIAETLKRYGAYIVDANIGTPFVIYAEIGSDANPSPSGWNNTVASEMQSIRAA 313
           ++N ++R++AETLK YGAY+VD N GTPF IY E G+  +    GWNNTVA +++ +R A
Sbjct: 263 ISNPDLRKVAETLKTYGAYVVDRNFGTPFFIYVENGAGFDLHKGGWNNTVADDLERMRVA 322

Query: 314 LRRVVSAQSWIDGNGKTFTPNQNLNLLSMRGNWTQQSGSTLGKYSSWDQAVVFPATSSMS 373
           LR+V + Q W+DG GK     + +NLLSMRG W  Q+GST G + +W QAVVFPAT +  
Sbjct: 323 LRQVTAVQGWLDGIGKQVVLQEKMNLLSMRGPWHLQTGSTAGTFDTWQQAVVFPATGTRI 382

Query: 374 EVVNYSNRGMNAVTWANPVMGASYKLTARTTNGGKLRMSVYDQLVGKVVFDSGYLADGES 433
              NYS+RG++ ++WA   +G +Y+LTA+TT   KLR+ V +     V FDSG L +GES
Sbjct: 383 AQGNYSSRGLHPLSWAAAEVGKTYRLTAKTTGDAKLRLQVREPSGTSVYFDSGELGNGES 442

Query: 434 KTFTWNANSPRLVLYAQSGVGNSSAVGGQLLKAD 467
           K+F+W + +  + +YA SGVG  S V G+LL+ D
Sbjct: 443 KSFSWPSKTAIVYVYAISGVGGPSTVRGELLQQD 476


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.130    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 959,678
Number of extensions: 41865
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 382
Effective length of database: 720,272
Effective search space: 275143904
Effective search space used: 275143904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)