BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1854.p
         (478 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093965|ref|YP_001099040.1| hypothetical protein HEAR0719 [...   372   e-104

>gi|134093965|ref|YP_001099040.1| hypothetical protein HEAR0719
           [Herminiimonas arsenicoxydans]
          Length = 491

 Score =  372 bits (956), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/463 (47%), Positives = 309/463 (66%), Gaps = 9/463 (1%)

Query: 12  VFVLIACVIAAMAGLVLPVLAGMLDGSLAKLAAVPVLLILGGLFLFNKRLLLLCVLLLRA 71
           +FV++A  +A   G+++P  A ++D   A+L A+P +L+ G L LFN+ LLL  +++ R+
Sbjct: 32  LFVVVALALAI--GVIVPFYAELMDYKPARLLALPAVLVFGLLLLFNRMLLLALIIVFRS 89

Query: 72  SGDIVLESTRVGSGGGFSLGLGGAINALIILIAFLFIVEKPQLLPRKAWVPWFILLAIAV 131
           +GD++L+STR  S GG+  G+GG IN  +I++A + + EKP  LP+K  + W   L +A+
Sbjct: 90  AGDVILDSTRF-SIGGYETGIGGLINLCVIMLACMLVFEKPSRLPKKMTLAWLPFLLVAL 148

Query: 132 IGMVVSPDKGAALKIVLGLCSYFAVFVCAFYVVRTPEEFRSMILLILASSLIPTVYGFVS 191
            G+++SP+KG A++  L L SYF++F+ AFY VR+ ++FR  + L+L SS +P  Y  V 
Sbjct: 149 FGLMISPEKGDAIRSYLTLLSYFSMFIIAFYFVRSAQDFRRCVKLVLWSSTLPAAYALVD 208

Query: 192 TALNARGGLSG-----FRLQGTFGHPNIFAFYLTLVIVLGLYVIKSTQFKLDQFKRFALG 246
            AL+   G        FRLQ TF HPNIFAFYLTL+I L LYV+K       Q  R AL 
Sbjct: 209 IALHGAAGGMAGGAEGFRLQSTFTHPNIFAFYLTLIIPLTLYVLKDKTVVPGQGSRIALT 268

Query: 247 GYLGLLFLLLLLTQTRSAWVACFLIFLLYGVKFERRYLAYMLILGTLALLVPSVQERILQ 306
            YL  L  LL+LTQTRSAW+AC + F  Y + FERRYL Y+++L  +ALLVP ++ER+L 
Sbjct: 269 LYLFYLLALLVLTQTRSAWLACMISFFAYALLFERRYLLYLMLLPVVALLVPEIRERLLD 328

Query: 307 LDSGNTVTTYAKLNSFAWRTYLWHSGLNWMSPSHYLYGYGVEAFPFYSPIFFPLAGGVNW 366
           L SG T   YAKLNSFAWR  +W SGL WM PSHYL+GYG+EAF  YS  FFP A  +NW
Sbjct: 329 LGSGTTAVAYAKLNSFAWRLSIWESGLQWMRPSHYLFGYGLEAFRHYSQTFFPAANHMNW 388

Query: 367 GAHSVFVQWFFDTGLIGVVAYLAIFYQVMRVLIRYQKQDRLGGIILICTLIEYLVVSASD 426
           GAH+V+VQWFFD G++G++AYL ++ +V  +L    + DRL   + +  +  YL+VS+SD
Sbjct: 389 GAHNVYVQWFFDAGMVGLLAYLWLYARVALMLKSLMRIDRLAAFVTLALVFSYLIVSSSD 448

Query: 427 NMLAYLAFNWYFWLVMGMGWSVYANSEQGRLEAAGKKNRRLEQ 469
           N+  YL FNWYFW  +G+G ++ A+        AG++ R LEQ
Sbjct: 449 NIFGYLVFNWYFWFSVGIGCALAASVALPD-NKAGRQARPLEQ 490


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.330    0.145    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 782,334
Number of extensions: 29211
Number of successful extensions: 115
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 393
Effective length of database: 720,272
Effective search space: 283066896
Effective search space used: 283066896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 130 (54.7 bits)