BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1852.p
         (292 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093962|ref|YP_001099037.1| putative tyrosine-protein kinas...   333   8e-93

>gi|134093962|ref|YP_001099037.1| putative tyrosine-protein kinase
           (polysaccharide export protein) [Herminiimonas
           arsenicoxydans]
          Length = 299

 Score =  333 bits (853), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 161/279 (57%), Positives = 213/279 (76%), Gaps = 1/279 (0%)

Query: 14  LPNRSIGAILVDSGKLSPENAERILRLQRERGLRFGDAAIQLGLLTQSDIDQALSRQFDY 73
           L    +G+ILVD+G+L+ +  +RIL+ Q     RFGDA I LGLLT +DID ALS QF Y
Sbjct: 22  LAGSQMGSILVDNGRLTVDEMQRILQEQSIGRQRFGDAGIALGLLTPADIDFALSNQFSY 81

Query: 74  PYLLKGESKVSEKVVAAYNPFSKQVEALRALRSQLMVRWFDVDGKHKSLSIVSPESGEGR 133
           PYL++G+S VSE+V+AAY+PFS+QVEALRALRSQL++RW  V GK  +++I S E G+GR
Sbjct: 82  PYLIRGQSNVSEEVIAAYDPFSRQVEALRALRSQLVMRWLGVGGKRSTMAITSAERGDGR 141

Query: 134 SFIASNLAVVFSQLGERTLLIDADMRHPCQHELFGLDNRNGLSGVIAGRCSVADALQRVP 193
           SFIA+NLAV+FSQLG+RTLLIDADMR+P QH+LFG++NR+GLS +++GR  VAD + R+ 
Sbjct: 142 SFIAANLAVLFSQLGQRTLLIDADMRNPSQHQLFGIENRSGLSSILSGRSGVAD-VHRIA 200

Query: 194 ALLDLSVLPAGPTPPNPQELLGRPNFTQMLADLVQDFDVILVDTPSGAQYADGNMVSART 253
           +L+DLS+LP+G TPPNPQELLGR  F  ML +    FDVIL+DTP   +YAD    +AR 
Sbjct: 201 SLVDLSILPSGATPPNPQELLGRAAFPHMLREFSSAFDVILIDTPPDHEYADSQTAAARA 260

Query: 254 GASLVVVRTHVTHISAVRALTDKLTSAHVAVVGSVVNEF 292
           G++LVV R  ++H  A+  L D +  A V VVG+V+NE+
Sbjct: 261 GSALVVARKDISHAGAIGNLVDSMKHAGVMVVGAVLNEY 299


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 548,041
Number of extensions: 22740
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 211
Effective length of database: 733,452
Effective search space: 154758372
Effective search space used: 154758372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)