BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1850.p
         (263 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093960|ref|YP_001099035.1| putative polysaccharide export ...   287   4e-79

>gi|134093960|ref|YP_001099035.1| putative polysaccharide export
           protein [Herminiimonas arsenicoxydans]
          Length = 267

 Score =  287 bits (734), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 145/263 (55%), Positives = 197/263 (74%), Gaps = 4/263 (1%)

Query: 1   MRKVVFLLVGLMLASWSLFAQADDILLGAGDVIRVKVYGSDDLSLETRISEAGVISYPLV 60
           +R+ + +++ + + SW+  A   D+ LG GDV+++ V+G+ DL+LETR+SEAG ISYPLV
Sbjct: 9   VRQAMLMVLMVTVGSWTYAA---DVPLGPGDVLKITVFGNPDLTLETRVSEAGSISYPLV 65

Query: 61  GEVKIGGLSTAQAESKIAGLLKKGGYLLNPQVNILVTVPQSQMVSVLGQVTKPGRYSLDG 120
           G+VK+GGLS+ +AE KIA LL KGG++  PQVN++VT  QSQ VSVLGQV KPGRY +DG
Sbjct: 66  GDVKVGGLSSNEAERKIAELLDKGGFVRKPQVNLMVTEMQSQQVSVLGQVNKPGRYPVDG 125

Query: 121 RRNVADVIALAGGVTPDGGDVVTIIRNDGKGGVSKQLVDIYAITHSGDTTSLPEVGANDV 180
           +R++ D++ALAGG   + GD V I+ +   G  SK+++D+  +  SGD     ++ A D 
Sbjct: 126 KRSLTDILALAGGANEEAGDTV-ILTHTQDGKTSKEIIDLLELVRSGDPAKNRQLTAGDS 184

Query: 181 VYVERALRFYIYGEVQRPGVYKLERGTTVLQALSVGGGLTQRGTERGLVVKRRDADGNMQ 240
           ++VERA RFYIYGEVQ+PG YKLER   VLQALS GGGL+ RGTERG+ +KRRDA+G +Q
Sbjct: 185 LFVERAPRFYIYGEVQKPGSYKLERDMMVLQALSSGGGLSPRGTERGVRIKRRDANGVLQ 244

Query: 241 EIPVKKEDLLQADDTVYVKESWF 263
            I VK +DLL+ +D VYVKES F
Sbjct: 245 IINVKHDDLLKPNDIVYVKESLF 267


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.138    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 485,130
Number of extensions: 19323
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 183
Effective length of database: 736,747
Effective search space: 134824701
Effective search space used: 134824701
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)