BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1848.p
         (440 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093959|ref|YP_001099034.1| putative UDP-glucose lipid carr...   517   e-148
gi|134094381|ref|YP_001099456.1| putative sugar-1-phosphate tran...   120   2e-28

>gi|134093959|ref|YP_001099034.1| putative UDP-glucose lipid carrier
           transferase [Herminiimonas arsenicoxydans]
          Length = 454

 Score =  517 bits (1331), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 257/441 (58%), Positives = 333/441 (75%), Gaps = 6/441 (1%)

Query: 3   VAYLWVLVRLSHHIFNGDYWVLAIMAFFLSSYFF---TEFHERRLRRNPRGPSSFAPVLD 59
           +  L+++  LS H+F+ ++ VLAI+ F +S   F     + +      P    S A  L 
Sbjct: 17  IGLLYLITVLSGHVFSANHVVLAILTFLISCTVFGWSDPWRDASASNVPMLGKSIA--LA 74

Query: 60  WLAVAAVLVVVAYICEFYQNLSMRAIFSWVVSTPIGLIISQHVQSRVMRDLHTKGEVSKA 119
           W+AV  +L+  AY+   +     R    W+  TP  L+++Q +  +    LH K  +   
Sbjct: 75  WMAVVVLLLFFAYVAGLFALFLQRETLIWLAITPPALLLAQIILQKASFGLHGK-SMRSV 133

Query: 120 IIIGVNPAALKLADRMEKYPSLMIKLMGFFDDRELNRQPPGTYTPLHGKMSDVAAYVRQN 179
           I++GVN  ++KLA+R+++ P L +++ GFFDDR+ +RQP     PL G M+D+ +YVR N
Sbjct: 134 IMVGVNELSVKLAERVDENPDLRMEVSGFFDDRDSSRQPEDRQVPLLGGMADIPSYVRNN 193

Query: 180 NINMVYISMPISAQPRVLQMIDELQDTTASIYFIPDIYIFNLIQARFDYVGGMAVMAICE 239
           NIN ++IS PISAQPR+ ++++ELQDTTASIYF+PDIY+F+LIQARFD V G+ V+AICE
Sbjct: 194 NINTIFISQPISAQPRIRKLLNELQDTTASIYFLPDIYVFDLIQARFDSVAGLPVVAICE 253

Query: 240 TPFTGTNNIVKRLSDLVLASGILLMLLPVMVVIAICVKLTSPGPIIFKQRRYGLDGEEIV 299
           +PFTG N++VKR SD+VLA  I L+LLPVM+ IAI +K TSPGP+IF+QRRYGLDGEEI+
Sbjct: 254 SPFTGINSMVKRGSDIVLALIIQLLLLPVMLGIAIAIKSTSPGPVIFRQRRYGLDGEEII 313

Query: 300 VYKFRSMTVMEDGGKVTQATKGDMRLTKIGGFLRSSSLDELPQFFNVLQGRMSIVGPRPH 359
           VYKFRSMTV EDG +V QAT+ D R+T++G FLR SSLDELPQFFNVLQGRMSIVGPRPH
Sbjct: 314 VYKFRSMTVCEDGAQVVQATRNDQRITRVGAFLRRSSLDELPQFFNVLQGRMSIVGPRPH 373

Query: 360 AVAHNELYRKQIKGYMLRHKVKPGITGWAQVNGLRGETETLDKMKARIEFDLEYLRRWSL 419
           AVAHNELYRK+IKGYMLRHKV+PGITGWAQVNG RGET+TLDKM+ARI +DL+YLRRWSL
Sbjct: 374 AVAHNELYRKKIKGYMLRHKVRPGITGWAQVNGFRGETDTLDKMEARIAYDLDYLRRWSL 433

Query: 420 VFDLWIIFQTVRMVIKRDNAY 440
             DLWII +TV +V+KRDNAY
Sbjct: 434 ALDLWIIARTVGVVLKRDNAY 454


>gi|134094381|ref|YP_001099456.1| putative sugar-1-phosphate
           transferase (partial before start's modification)
           [Herminiimonas arsenicoxydans]
          Length = 186

 Score =  120 bits (300), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/190 (39%), Positives = 110/190 (57%), Gaps = 7/190 (3%)

Query: 249 VKRLSDLVLASGILLMLLPVMVVIAICVKLTSPGPIIFKQRRYGLDGEEIVVYKFRSMTV 308
           +KR  DL LA     +LL  + ++++ VKLTS GPI++   R G   +   + KFR+M +
Sbjct: 1   MKRTFDLTLAILASFVLLVPIGLVSLFVKLTSQGPIVYWSDRVGRGNKIFKMPKFRTMQI 60

Query: 309 MEDGGKVTQATKGDMRLTKIGGFLRSSSLDELPQFFNVLQGRMSIVGPRPHAVAHNELYR 368
                     +  +  LT IG FLR SSLDELPQ +++L+G MS VGPRP     ++L  
Sbjct: 61  DTPAVATHLLSNPEQFLTPIGSFLRRSSLDELPQLWSILRGDMSFVGPRPALFNQDDLIA 120

Query: 369 KQIKGYMLRHKVKPGITGWAQVNGLRGETETLDKMKARIEFDLEYLRRWSLVFDLWIIFQ 428
            + +  +   +V PG+TGWAQ+NG R E    +K    ++ D+EY++R S  FDL IIF 
Sbjct: 121 LRTRYGV--DQVTPGLTGWAQING-RDELPIPEK----VQLDVEYMQRQSFWFDLKIIFL 173

Query: 429 TVRMVIKRDN 438
           T   V+K+D 
Sbjct: 174 TFLKVLKKDG 183


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.327    0.141    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 777,314
Number of extensions: 28794
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 2
Length of query: 440
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 355
Effective length of database: 720,272
Effective search space: 255696560
Effective search space used: 255696560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)