BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1847.p
         (396 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093958|ref|YP_001099033.1| hypothetical protein HEAR0712 [...   294   5e-81

>gi|134093958|ref|YP_001099033.1| hypothetical protein HEAR0712
           [Herminiimonas arsenicoxydans]
          Length = 401

 Score =  294 bits (753), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 158/406 (38%), Positives = 233/406 (57%), Gaps = 28/406 (6%)

Query: 1   MCALLV-SMTCPFAYAADPGQVV---VPYVQYTYLHDDNLLRLSGPDAAQTAFGSPRLSD 56
           + ALL  ++TC    AA+    V   +PY  +   +D NLLR   P+AA+ +  +  LSD
Sbjct: 14  VLALLAGALTCTAVQAAEESAAVDTFIPYATFGAYYDANLLRQ--PEAAKQSGAA--LSD 69

Query: 57  NVQSKQGGLRIDKTLSRQHILLDASVTKNTFDHFSQFDNDGRDLKADWGWVLGEHVSGNL 116
                  GLR+DK L RQ +  D S     +D FSQF+NDG+DL A+W WV+G   SGN+
Sbjct: 70  RWTRAAIGLRMDKELGRQRLTADLSAYHAEYDRFSQFNNDGKDLLANWKWVIGNQFSGNV 129

Query: 117 GYVYSRSLTPFQNFRVLQANIRTMDTKYLNVAWQLHPDWAVHVQASKFGLAYDLLSQQSN 176
           G  YS  LTPF ++R  + +IRT    Y++ +W+ HP W ++   ++F L YD  +Q  +
Sbjct: 130 GTSYSEGLTPFDDYRSFERSIRTQRKNYVDGSWRFHPSWQLNAAYNRFDLRYDTQAQNPS 189

Query: 177 NFTQNIAEFGVDYTPRSGSTAGLQVRRTTGRYPFDSVIGTGTVNNSFVQEDYKAKIVWLY 236
               ++A+ G+DY  +SG+  GL  R   GRYP+  +       NS+ Q + KAK+ W  
Sbjct: 190 ERNLDMADIGIDYLAKSGNKIGLVARHIEGRYPYADI-------NSYDQNELKAKVDWQL 242

Query: 237 SDKTKLQFLGGVTQRE------RDAAAPGSGYRGLNARLIGDWAATAKTGFTANLWREIG 290
           + KT LQFLGG  +RE      RD++ P       +ARL   W AT KT F+  +WRE+G
Sbjct: 243 TGKTYLQFLGGWARREYAANPQRDSSVP-------SARLTAYWKATGKTAFSLGVWRELG 295

Query: 291 GVNDIDANFALTTGASLVASYQPTAKLRFDGLVDYEHRNYNGASIVTGVTPSTRRDNYEK 350
             +D+ AN+A   G S+ +++  T+K+  DGL+  E R+YNG +++ G+ PS R D Y  
Sbjct: 296 ATDDLAANYARNQGVSVGSTWDATSKISVDGLIMTEKRDYNGVAVMQGIAPSDRDDRYRN 355

Query: 351 ATLSLTYSPTTSLSLMLAVYRENLKSNINSFGYLSNGISLTSRYEF 396
           A L +TY PT    +  +VYR  L SNI +  Y +NG+ + +RYEF
Sbjct: 356 AMLGVTYKPTLHWRVRASVYRTTLDSNIAAASYKTNGVQINTRYEF 401


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.133    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 746,287
Number of extensions: 29715
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 312
Effective length of database: 723,567
Effective search space: 225752904
Effective search space used: 225752904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)