BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1846.p
         (200 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093977|ref|YP_001099052.1| hypothetical protein HEAR0731 [...   104   4e-24

>gi|134093977|ref|YP_001099052.1| hypothetical protein HEAR0731
           [Herminiimonas arsenicoxydans]
          Length = 191

 Score =  104 bits (259), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 104/179 (58%), Gaps = 9/179 (5%)

Query: 16  IPGACILALWLAINRMWRPMFAWLAAFGMAMLIVVISKLLFMGWDISLPMLNFTGFSGHT 75
           +P A +LA+WLA  R W+P F W   FG  +++VV +K+ ++GW   +  ++FTG SGH 
Sbjct: 1   MPVAALLAIWLAGARAWKPFFLWCFLFGSGIVLVVATKIAYIGWGAGIAAIDFTGISGHA 60

Query: 76  ASSSALYLSLALLLTQQCSRGRRLLVLALTALVVTAVGTSRLMIKVHSESEV----LLGL 131
             ++A+  +L  +L Q+ +R  + L L    +   A+G SRL I VHS +EV    LLG 
Sbjct: 61  MRATAIAPALMAILLQKQTRQIQQLGLLAGLVFGIAIGISRLAIHVHSVAEVVSGCLLGA 120

Query: 132 LVGAGAAWAFGLSLRESAPPLRHLLLPLGLAAALMMTGFDKPAPTQSFLQELAKNLSGR 190
           +VGAG AW     +R         LL +G+ A L +    KPAPT+S+++ +A  LSG+
Sbjct: 121 VVGAGFAWL----IRNRPVFFDRKLLVIGVLALLPVLTL-KPAPTESWMESVAYYLSGK 174


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.327    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 244,729
Number of extensions: 6502
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 123
Effective length of database: 746,632
Effective search space: 91835736
Effective search space used: 91835736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 126 (53.1 bits)