BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1842.p
         (157 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095000|ref|YP_001100075.1| integration host factor subunit...   240   2e-65
gi|134095741|ref|YP_001100816.1| integration host factor subunit...    69   1e-13
gi|134094955|ref|YP_001100030.1| DNA-binding protein HU-beta [He...    54   3e-09

>gi|134095000|ref|YP_001100075.1| integration host factor subunit
           alpha [Herminiimonas arsenicoxydans]
          Length = 151

 Score =  240 bits (613), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 116/129 (89%), Positives = 125/129 (96%)

Query: 21  MNNVNSNEFQSVLDADLHRAVLESQARSQADKNLPTLTKAELAELLFEQVGLNKREAKDM 80
           MN+VNS+E QSVL ADL+RA+LE+Q RSQA+K+LPTLTKAELAELLFEQVGLNKREAKDM
Sbjct: 15  MNDVNSSELQSVLAADLNRAMLEAQVRSQAEKDLPTLTKAELAELLFEQVGLNKREAKDM 74

Query: 81  VETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 140
           VETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK
Sbjct: 75  VETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 134

Query: 141 LKEMVELSS 149
           LK MVE+S+
Sbjct: 135 LKSMVEVSN 143


>gi|134095741|ref|YP_001100816.1| integration host factor subunit
           beta [Herminiimonas arsenicoxydans]
          Length = 101

 Score = 68.6 bits (166), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 57  LTKAELAELLFEQVG-LNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRP 115
           +TK+EL   L E+   L  ++A   V+T  D + +AL  G+ +++ GFG+F L  +P R 
Sbjct: 1   MTKSELIARLAERYPQLVAKDADYAVKTILDAMSDALATGQRIEIRGFGSFALNSRPPRI 60

Query: 116 GRNPKTGEEIPITARRVVTFHASQKLKEMVELSSGSPV 153
           GRNPK+G+++ +  +RV  F   ++L+E V+   G P+
Sbjct: 61  GRNPKSGDKVMVPEKRVPHFKPGKQLRERVDAMVGQPI 98


>gi|134094955|ref|YP_001100030.1| DNA-binding protein HU-beta
           [Herminiimonas arsenicoxydans]
          Length = 90

 Score = 54.3 bits (129), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 45/89 (50%)

Query: 57  LTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPG 116
           + K EL + +     ++K  A   ++     ++  L++   V L GFG F +  +  R G
Sbjct: 1   MNKTELIDHIAGSADISKAAATRALDAVIVAVKTTLKKNGTVTLVGFGTFSVGKRAARTG 60

Query: 117 RNPKTGEEIPITARRVVTFHASQKLKEMV 145
           RNP+TGE I I A +V  F   + LK+ V
Sbjct: 61  RNPRTGEAIKIKAAKVPKFKPGKALKDAV 89


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.311    0.127    0.335 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 261,363
Number of extensions: 9454
Number of successful extensions: 27
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 3
Length of query: 157
Length of database: 1,000,347
Length adjustment: 74
Effective length of query: 83
Effective length of database: 756,517
Effective search space: 62790911
Effective search space used: 62790911
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 125 (52.8 bits)