BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1841.p
         (808 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095001|ref|YP_001100076.1| phenylalanyl-tRNA synthetase su...  1275   0.0  

>gi|134095001|ref|YP_001100076.1| phenylalanyl-tRNA synthetase
           subunit beta [Herminiimonas arsenicoxydans]
          Length = 809

 Score = 1275 bits (3300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/809 (77%), Positives = 710/809 (87%), Gaps = 1/809 (0%)

Query: 1   MQFSEKWLRTMVNPTMTSDELSHLLTMSGLEVEEVEPVAPPFTNVVVGEVLEVTKHPDAD 60
           MQFSE WLRTMVNP MTS+EL+H+LTMSGLEVEEVEPVAPPF+NVVV EV E+ KHP+AD
Sbjct: 1   MQFSESWLRTMVNPNMTSNELAHMLTMSGLEVEEVEPVAPPFSNVVVAEVREIAKHPNAD 60

Query: 61  RLNVCRVNVHTGTILNIVCGAPNVRAGLKVPCAMVGAVLPPGPDGKPFEIKVGKLRGVES 120
           RLNVC+V+  TGT+LNIVCGAPNVRAG+KV CA+ GAVLPPG DGKPFEIKVG LRGVES
Sbjct: 61  RLNVCQVDAGTGTLLNIVCGAPNVRAGMKVVCALAGAVLPPGEDGKPFEIKVGALRGVES 120

Query: 121 QGMLCSARELKLSEDHGGLLELPDDAPVGQNFRDYMLLNDLKFTIKLTPNKADCLSVLGV 180
           QGMLCS +ELKLS++ GGL++LP DAP+GQNFRDY  LNDLKFTIKLTPNKADCLSVLGV
Sbjct: 121 QGMLCSVKELKLSDEQGGLMDLPSDAPIGQNFRDYYQLNDLKFTIKLTPNKADCLSVLGV 180

Query: 181 AREVSALTGAPLKAPVYQAATVNLDEKLPVRISAPDLCGRFAGRVIRGLNAKAATPPWMK 240
           AREVSALTG PLK P YQA    + + LPV +SAPDLCGRF+GR+IRGLNA+A+TP WMK
Sbjct: 181 AREVSALTGTPLKMPTYQAVAATIADVLPVTVSAPDLCGRFSGRIIRGLNARASTPDWMK 240

Query: 241 RRLERSGQRSISALVDISNYVMLELGRPSHVFDLDKIHGGLDVRWGRKGESLKLLNGNTV 300
           +RLERSGQR ISALVDISNYVMLELGRP+HVFDLDKIHGGL+VRWG+K ESLKLLNGNTV
Sbjct: 241 QRLERSGQRPISALVDISNYVMLELGRPTHVFDLDKIHGGLNVRWGKKDESLKLLNGNTV 300

Query: 301 EVDEWVGVISDDKEIESLAGIMGGDATAVSLETTNIYLEAAFWFPQAIQGRARRYNFSTD 360
            VDEW+GVI+D+++IESLAGIMGGDATAVSL+T +IYLEAAFW+P AIQGRARR+NFSTD
Sbjct: 301 AVDEWIGVIADEQQIESLAGIMGGDATAVSLDTQDIYLEAAFWYPNAIQGRARRFNFSTD 360

Query: 361 AAHRFERGVDFATVVDHIERITALLLEICGTAE-TRVGPVDDQIVNLPKREPVTLRTARA 419
           AAHRFERGVDFAT V+HIERITAL++EICG  + T VGP+DD IVNLPKR+PV++RTARA
Sbjct: 361 AAHRFERGVDFATTVEHIERITALIVEICGQKDKTAVGPIDDHIVNLPKRDPVSVRTARA 420

Query: 420 AKVIGVEITDEMVSDIFKRLGLSFDYEPGLFSVTPPSYRFDIEIEEDLIEEVARVYGFEN 479
            KVIGV +TD  ++DIF RL L F  + G+FSVTPPSYRFDIEIEEDLIEE+ARVYGFEN
Sbjct: 421 VKVIGVPLTDAQIADIFTRLALPFTQKDGVFSVTPPSYRFDIEIEEDLIEEIARVYGFEN 480

Query: 480 IPALPPVAANAMRIAPENTRSLFAIRRLLADQDYQEVVNFSFVESAWEADFGGNVDPIKL 539
           IPALPPVA NAMRI PE+TRSLF IRR LAD DYQEVVNFSFVE AWEADF GN +PIKL
Sbjct: 481 IPALPPVATNAMRIRPESTRSLFTIRRQLADADYQEVVNFSFVEQAWEADFAGNSNPIKL 540

Query: 540 LNPIASQMSVMRSSLIAGLVANARYNVNRKAARIRVFEVGAVFHKDAEVVDGPLSVAGFA 599
           LNPIASQMSVMRSS+I  L+AN RYN+NRK +RIR+FE+GAV+ ++    DGPLSVAG+ 
Sbjct: 541 LNPIASQMSVMRSSMIGNLIANVRYNLNRKVSRIRLFEIGAVYLRNNIEQDGPLSVAGYD 600

Query: 600 QPKRVAALAYGPVAEEQWGQVSRNVDYFDVKADLEALFAPRTLRFVKAEHPALHPGRTAQ 659
           QPK  AA+AYGP+ EEQWG  SRNVDYFDVKADLEALFAP+ L F K EHPALHPGR+A 
Sbjct: 601 QPKHAAAIAYGPIVEEQWGMDSRNVDYFDVKADLEALFAPKMLTFAKVEHPALHPGRSAH 660

Query: 660 VLLGEKVVGVIGELHPKWQQKYDLPLAPVVFEVDAEALQQRDLPSYTEISKFPAVSRDIA 719
           VLL  KV+G IGELHP+WQQKYDLPLAPV+FEV+A +LQQ ++PSY EISKFPAV+RD+A
Sbjct: 661 VLLDGKVIGFIGELHPRWQQKYDLPLAPVLFEVEASSLQQVNVPSYREISKFPAVTRDLA 720

Query: 720 LVVKHSVGAQQVLDVLAAEKQANPDCAILQALVLFDEYQGKGLETDEKSLAFRCTLQDTQ 779
           LVVKH+V  Q ++DV  AEK+ NP C ILQ +VLFDEY+GKGLE+DEKSLAFRCTLQDTQ
Sbjct: 721 LVVKHTVSMQDLMDVFVAEKKMNPICNILQVVVLFDEYRGKGLESDEKSLAFRCTLQDTQ 780

Query: 780 NTLQDDKVDLAVNALVAAASVKLGARLRA 808
            TLQDD VD A+ ALV AA  K GA+LRA
Sbjct: 781 LTLQDDLVDAAMAALVVAAGAKHGAKLRA 809


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,456,033
Number of extensions: 59484
Number of successful extensions: 162
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 1
Length of query: 808
Length of database: 1,000,347
Length adjustment: 89
Effective length of query: 719
Effective length of database: 707,092
Effective search space: 508399148
Effective search space used: 508399148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)