BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1840.p
         (342 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095002|ref|YP_001100077.1| phenylalanyl-tRNA synthetase su...   637   0.0  

>gi|134095002|ref|YP_001100077.1| phenylalanyl-tRNA synthetase
           subunit alpha [Herminiimonas arsenicoxydans]
          Length = 338

 Score =  637 bits (1643), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/342 (91%), Positives = 325/342 (95%), Gaps = 4/342 (1%)

Query: 1   MNPLDQLLGQLVTQAQADFAAAPDAAALENAKAKYLGKTGQITEQMKGLGKLAPEERKVQ 60
           MNPLDQL    V QAQ DFAAA DAAALENAKAKYLGKTGQITEQMK LGKLAP+ERK Q
Sbjct: 1   MNPLDQL----VIQAQTDFAAADDAAALENAKAKYLGKTGQITEQMKSLGKLAPDERKTQ 56

Query: 61  GAIINVAKEQIETALTARRDALANAQMQARLNAEAIDVTLPGRGRGVGGIHPVMRSWQRV 120
           GA+IN AKE+IE ALTARRDAL+NAQM++RLNAEAID+TLPGRGRG GGIHPVMR+WQRV
Sbjct: 57  GAVINSAKEKIEAALTARRDALSNAQMESRLNAEAIDITLPGRGRGTGGIHPVMRTWQRV 116

Query: 121 EEIFRSIGFDVADGPEIETDWTNFTALNSPENHPARSMQDTFYIEGNDTQGKPLLLRTHT 180
           EEIF SIGFDVADGPEIE DWTNFTALNSPENHPARSMQDTFYIEGNDTQGKPLLLRTHT
Sbjct: 117 EEIFGSIGFDVADGPEIENDWTNFTALNSPENHPARSMQDTFYIEGNDTQGKPLLLRTHT 176

Query: 181 SPMQVRYARMNKPPIKVIAPGRTYRVDSDATHSPMFHQVEGLWIAEDISFADLKGVYLNF 240
           SPMQVRYARMNKPPI+VIAPGRTYRVDSDATHSPMFHQVEGLWI E+ISFADLKGVYLNF
Sbjct: 177 SPMQVRYARMNKPPIRVIAPGRTYRVDSDATHSPMFHQVEGLWIDENISFADLKGVYLNF 236

Query: 241 VKAFFETDDLQVRFRPSYFPFTEPSAEIDIAFGSGPLKGRWLEVSGAGQVHPTVVRNMGL 300
           VKAFFETDDLQVRFRPSYFPFTEPSAEIDIAFGSGPLKGRWLEVSGAGQVHP V+RNMG 
Sbjct: 237 VKAFFETDDLQVRFRPSYFPFTEPSAEIDIAFGSGPLKGRWLEVSGAGQVHPNVMRNMGF 296

Query: 301 DPEQYIGFAFGSGLERLTMLRYGINDLRLFYEGDLRFLKQFN 342
           DPEQ+IGFAFGSGLERLTMLRYGINDLRLFYEGDLRFLKQFN
Sbjct: 297 DPEQFIGFAFGSGLERLTMLRYGINDLRLFYEGDLRFLKQFN 338


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 643,526
Number of extensions: 26968
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 260
Effective length of database: 730,157
Effective search space: 189840820
Effective search space used: 189840820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)