BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1836.p
         (635 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095006|ref|YP_001100081.1| threonyl-tRNA synthetase [Hermi...  1105   0.0  

>gi|134095006|ref|YP_001100081.1| threonyl-tRNA synthetase
           [Herminiimonas arsenicoxydans]
          Length = 635

 Score = 1105 bits (2858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/635 (83%), Positives = 580/635 (91%)

Query: 1   MVSVRLPDGSQRQFDNPVTVAQVAANIGTGLAKAALAGRVDGKLVDTSYLIDKDADLAII 60
           M++VRLPDGSQR+FD PVTVAQVAANIG GLAKAALAG+V+G +VDTSYLI++D+DL+II
Sbjct: 1   MITVRLPDGSQREFDTPVTVAQVAANIGAGLAKAALAGKVNGNVVDTSYLIEQDSDLSII 60

Query: 61  TDKDADGLEVIRHSTAHLLAYAVKELFPDAQVTIGPVIDNGFYYDFSYKRPFTPEDLQAI 120
           TDKDA+GL+VIRHSTAHLLAYAVKELFPDAQVTIGPVI+NGFYYDFSYKRPFTPEDL AI
Sbjct: 61  TDKDAEGLDVIRHSTAHLLAYAVKELFPDAQVTIGPVIENGFYYDFSYKRPFTPEDLLAI 120

Query: 121 EKKMAELAKKDEPVTRKVLPRDEAVAYFKSIGEDYKAEIIASIPQNEDVSLYTEGSFTDL 180
           EKKMAELAKKDEPVTR+VLPRD AV YFKSIGE YKAEIIASIP ++DVSLYTEG FTDL
Sbjct: 121 EKKMAELAKKDEPVTRQVLPRDVAVEYFKSIGEAYKAEIIASIPADQDVSLYTEGKFTDL 180

Query: 181 CRGPHVPSTGKLKVFKLMKLAGAYWRGDSNNEMLQRVYGTAWAKKEDQEAYLHMLEEAEK 240
           CRGPHVPSTGKLKVFKLMKLAGAYWRGDS NEMLQR+YGTAWAKKE+QEAYL MLEEAEK
Sbjct: 181 CRGPHVPSTGKLKVFKLMKLAGAYWRGDSKNEMLQRIYGTAWAKKEEQEAYLTMLEEAEK 240

Query: 241 RDHRKLGRALDLFHFQDEAPGLIFWHPKGWTIWQQVEQYMRRVYQDNGYQEVKAPQILDR 300
           RDHRKLGRALDLFHFQ+EAPGLIFWHPKGWT+WQQVEQYMRRVYQDNGYQEVKAPQILDR
Sbjct: 241 RDHRKLGRALDLFHFQEEAPGLIFWHPKGWTVWQQVEQYMRRVYQDNGYQEVKAPQILDR 300

Query: 301 SLWEKTGHWENYRENMFTTESENRAYALKPMNCPGHIQIFNSGLHSYRDLPLRYGEFGQC 360
           SLWEK+GHWENY+ENMFTTESENR+YALKPMNCPGH+QIF S L SYR+LPLRYGEFGQC
Sbjct: 301 SLWEKSGHWENYKENMFTTESENRSYALKPMNCPGHVQIFASDLRSYRELPLRYGEFGQC 360

Query: 361 HRNEPSGALHGMMRVRGFTQDDGHIFCTEDQIQEEVAAFNRVVREVYDCFGFKEVAVKLA 420
           HRNEPSG+LHGMMRVRGFTQDDGHIFCTEDQI +E  AF  ++++VY  FGF  V  K+A
Sbjct: 361 HRNEPSGSLHGMMRVRGFTQDDGHIFCTEDQILDECVAFTALLQKVYRDFGFTNVIYKVA 420

Query: 421 LRPEKRIGAEEVWDKAENALREAIRASGSEWEELPGEGAFYGPKIEYHLKDSIGRSWQCG 480
            RPEKR+G++E WDKAE AL  ++  SG  +E  PGEGAFYGPKIEY LKD+IGR WQCG
Sbjct: 421 TRPEKRVGSDEAWDKAEAALIASLDRSGCTYEISPGEGAFYGPKIEYTLKDAIGRMWQCG 480

Query: 481 TMQVDFSMPARLGAEYVTEDNNRKVPVMLHRAIVGSLERFIAILIENHAGAMPLWLAPTQ 540
           T+QVDFSMPARLGAEYV EDN +K+PVMLHRAI+GS ERFI +LIENHAGA+PLWLAP Q
Sbjct: 481 TIQVDFSMPARLGAEYVAEDNTKKIPVMLHRAILGSFERFIGMLIENHAGALPLWLAPVQ 540

Query: 541 VVILNISDAQADYVQNVAQTLKKQGFRVETDLRNEKITYKIRQHSIQKPPYILVVGDKER 600
           + +LNISDAQADY Q VAQ LKKQGFRV  DLRNEKITYKIR+HSIQK PYI+V+GDKER
Sbjct: 541 IAVLNISDAQADYAQAVAQNLKKQGFRVHVDLRNEKITYKIREHSIQKLPYIIVIGDKER 600

Query: 601 DANTVAVRARGNVDLGVMSIDTLVERLKDEVAAKA 635
           DA TVAVRARGNVDLGVM +D LVERL +EV AKA
Sbjct: 601 DAGTVAVRARGNVDLGVMPVDLLVERLNNEVEAKA 635


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,253,090
Number of extensions: 53737
Number of successful extensions: 158
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1,000,347
Length adjustment: 88
Effective length of query: 547
Effective length of database: 710,387
Effective search space: 388581689
Effective search space used: 388581689
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)