BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1833.p (750 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095007|ref|YP_001100082.1| (p)ppGpp synthetase I [Herminii... 1132 0.0 gi|134095317|ref|YP_001100392.1| bifunctional (p)ppGpp synthetas... 370 e-103 >gi|134095007|ref|YP_001100082.1| (p)ppGpp synthetase I [Herminiimonas arsenicoxydans] Length = 761 Score = 1132 bits (2928), Expect = 0.0, Method: Compositional matrix adjust. Identities = 564/765 (73%), Positives = 638/765 (83%), Gaps = 19/765 (2%) Query: 1 MVSVASTQGEGLAAITAGLGPDDAARVEQALAELEPLYADRQILSGQNALQ-------FA 53 MVS+ASTQ + A + +GL D+ARV ALA ++P Y + + +GQ+A + FA Sbjct: 1 MVSLASTQSDVPALLRSGLTEHDSARVMDALAYVKPFYTGKSVSAGQDAFESEQDAFEFA 60 Query: 54 VSVATVLTALNVDADTRIAGLAFEVQMLYPELDEKLEERFGKEIADLVGNVRQLMRFHSL 113 VATVL+ L DADTRIA L FE++M+ P EK+EERFGK+++DLV VRQLMR H Sbjct: 61 QGVATVLSELETDADTRIAALLFELEMIAPAAAEKIEERFGKDVSDLVAGVRQLMRLHEA 120 Query: 114 SFQPQNQEVLRGKNAAQQAAAQVETLRKMLLAMATDMRAVLVRLASRVATLRYFAETKQE 173 +F E R KNAAQ+AAAQ+E LRKMLLAMA+DMR VLVRL +RV TLRYFA+ K Sbjct: 121 TFT--QHEAARNKNAAQEAAAQLEVLRKMLLAMASDMRVVLVRLGTRVTTLRYFADNKLV 178 Query: 174 NEASAQYARQTFELYAPLANRLGIWQLKWELEDLSFRFLEPVTYKRIAKMLEEKRLEREA 233 NE S QYAR+TF+LYAPLANRLGIWQLKWELEDLSFRFLEP Y+RIA +LEEKR+EREA Sbjct: 179 NERSRQYARETFDLYAPLANRLGIWQLKWELEDLSFRFLEPEAYRRIASLLEEKRVEREA 238 Query: 234 FVANAIARLRAEMAAQEIRAEVSGRPKHIYSIWNKMRGKSIDFSELYDVRAFRVIVDDVK 293 FV N+I RL++EMAA I+AEV GRPKHI+SIW+K+RGK I+FS+LYDVRAFRVIVDDVK Sbjct: 239 FVENSIKRLKSEMAAAGIKAEVFGRPKHIFSIWSKLRGKEIEFSDLYDVRAFRVIVDDVK 298 Query: 294 TCYAVLGIVHNIWTPIPEEFDDYISRPKQNGYQSLHTVVMAEDGRALEVQIRTHEMHHFA 353 TCY VLGIVHNIWTPIPEEFDDYISRPK NGYQSLHT+V+AEDGR LEVQ+RT++MH FA Sbjct: 299 TCYTVLGIVHNIWTPIPEEFDDYISRPKANGYQSLHTIVIAEDGRPLEVQVRTNDMHDFA 358 Query: 354 EYGVAAHWRYKESGGSNFSAQKYDEKIAWLRQLLAWKNEVTDAVVDQEEVRRDWVQKLKS 413 EYGVAAHWRYKESGGSNF+ QKYDEKIAWLRQLLAWK+EV D VV QE+V RDWV+KLKS Sbjct: 359 EYGVAAHWRYKESGGSNFAGQKYDEKIAWLRQLLAWKSEVVDTVVGQEDVHRDWVEKLKS 418 Query: 414 ATLDERIYVLTPQARVIELPSGATPIDFAYHLHSDVGHRCRGARVDGVMVPLNTTLKNGQ 473 ATLD+RIYVLTPQARVIELP+GATPIDFAYHLHSDVGHRCRGARVDGV+VPLNT LKNGQ Sbjct: 419 ATLDDRIYVLTPQARVIELPNGATPIDFAYHLHSDVGHRCRGARVDGVLVPLNTVLKNGQ 478 Query: 474 TVEIITAKSGPG----VGPSRDWLSPDYAASSRTRSKIRAWFNAIEQQETLSVGRGLLEK 529 TV+IITAK VGPSRDWLSP YAAS RTRSK+RAWFNAI+QQETL+ GR L+EK Sbjct: 479 TVDIITAKGASAVTGTVGPSRDWLSPGYAASPRTRSKVRAWFNAIDQQETLASGRALIEK 538 Query: 530 TLQREGKTAVNLEELAQKLGFAKVDDLCLSLAKEEFSLRHVEQALHEGQE----KKPEID 585 TLQREGKTAVNLEELA KL FAK+DDL ++ K+EFSLR VEQAL G E + E++ Sbjct: 539 TLQREGKTAVNLEELAHKLDFAKLDDLFRAVGKDEFSLRTVEQALR-GDEASAAAQAELE 597 Query: 586 DEALITRKSRASSIVQGAKSGVLVVGTDGLLTQLARCCKPAPPDVIAGFVTRGKGVSIHR 645 D +I RKSRASS++ GAKSGVLVVGTDGL+TQLA+CCKPAPPD I GFVTRGKGVSIHR Sbjct: 598 D-VVIPRKSRASSVMHGAKSGVLVVGTDGLMTQLAKCCKPAPPDEIVGFVTRGKGVSIHR 656 Query: 646 VNCKNFAEMSSHAPERVIQTTWGAPARDTVYPVDIFVLASDRQGLLRDISDIFLRDKINV 705 +CKNF EM APERV+QT WG TVYPVDIFVLASDRQGLLRDISDIFLR+KINV Sbjct: 657 ADCKNFVEMRHKAPERVVQTAWGKTESATVYPVDIFVLASDRQGLLRDISDIFLREKINV 716 Query: 706 IGVSTQSVKGHARMAFTAEIGSTEQLQKALTVIREVKGVIEAKRQ 750 IGVSTQSVKG ARMAFTAEI ST QLQKAL VI EVKGV+ A+R Sbjct: 717 IGVSTQSVKGQARMAFTAEIASTAQLQKALAVIGEVKGVLAARRH 761 >gi|134095317|ref|YP_001100392.1| bifunctional (p)ppGpp synthetase II/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase [Herminiimonas arsenicoxydans] Length = 760 Score = 370 bits (950), Expect = e-103, Method: Compositional matrix adjust. Identities = 237/748 (31%), Positives = 379/748 (50%), Gaps = 64/748 (8%) Query: 19 LGPDDAARVEQALAELEPLYADRQILSGQNALQFAVSVATVLTALNVDADTRIAGLAFEV 78 L P + ++++A + + + +SG+ + ++VA + +DA +A L +V Sbjct: 57 LTPSELKKIKEAYRFSDEAHLGQMRMSGEPYISHPIAVAEICADWKLDAQAIMAALLHDV 116 Query: 79 QMLYPELDEKLEERFGKEIADLVGNVRQLMRFHSLSFQPQNQEVLRGKNAAQQAAAQVET 138 ++L ERFG +A++V + +L + L FQ Q AQ E Sbjct: 117 MEDQDVRKDELIERFGAPVANIVDGLSKLEK---LEFQ-------------SQIEAQAEN 160 Query: 139 LRKMLLAMATDMRAVLVRLASRVATLRYFAETKQENEASAQYARQTFELYAPLANRLGIW 198 RKMLLAMA D+R +L++LA R+ +R + + AR+T E+Y P+A+RLG+ Sbjct: 161 FRKMLLAMARDVRVILIKLADRLHNMRTLGSMSAVKKR--RIARETMEVYVPIAHRLGLN 218 Query: 199 QLKWELEDLSFRFLEPVTYKRIAKMLEEKRLEREAFVANAIARLRAEMAAQEIRAEVSGR 258 + EL+DL+F L P+ YK + K ++ R R V+ + + + A I A+V GR Sbjct: 219 NIYRELQDLAFSHLYPMRYKTLGKAVKAARGNRREVVSKILESVNKTLEATGIPAQVYGR 278 Query: 259 PKHIYSIWNKMRGKSIDFSELYDVRAFRVIVDDVKTCYAVLGIVHNIWTPIPEEFDDYIS 318 K +Y I+ KM K + FS++ D+ FRV+VD CY LG +H ++ P+P +F DYI+ Sbjct: 279 EKTLYGIYTKMLNKRLSFSQVLDIYGFRVVVDSFANCYVALGTLHALFKPMPGKFKDYIA 338 Query: 319 RPKQNGYQSLHTVVMAEDGRALEVQIRTHEMHHFAEYGVAAHWRYKESGGSNFSAQKYDE 378 PK NGYQSLHT ++ G +E QIRT +MH AE GVAAHW YK+ GS Q+ Sbjct: 339 IPKLNGYQSLHTTLIGPYGTPVEFQIRTQDMHRVAESGVAAHWLYKDDEGSLNDLQQRTH 398 Query: 379 KIAWLRQLLAWKNEVTDAVVDQEEVRRDWVQKLKSATLDERIYVLTPQARVIELPSGATP 438 AWL+ LL + + D+ ++++ +K + +YV TP++++I LP GAT Sbjct: 399 --AWLQSLLDIQKQTGDSA--------EFLEHVKVDLFPDSVYVFTPKSKIIALPRGATA 448 Query: 439 IDFAYHLHSDVGHRCRGARVDGVMVPLNTTLKNGQTVEIITAKSGPGVGPSRDWLSPDYA 498 +DFAY +H+DVG + +++ VPL T L+NG VEIIT+ P P+ +WL + Sbjct: 449 LDFAYTIHTDVGDQTIAVKINLEQVPLRTELRNGDIVEIITS---PSSRPNPNWLG--FV 503 Query: 499 ASSRTRSKIRAWFNAIEQQETLSVGRGLLEKTLQREGKTAVNL---------EELAQKLG 549 + + RS IR I E++ +GR LL + L +A+NL E L + Sbjct: 504 RTGKARSAIRHHLRTINLVESIDLGRKLLGQAL-----SALNLNPDLSPAVTERLLNESS 558 Query: 550 FAKVDDLC--LSLAKEEFSL--RHVEQAL-HEGQEKKPEIDDEALITRKSRASSIVQGAK 604 +DDL + + K +L RH+ L ++ P +D +V Sbjct: 559 AKSLDDLYADIGVGKRMAALVARHILGMLENDTPSPHPLLDVNG---------EVVNKQI 609 Query: 605 SGVLVVGTDGLLTQLARCCKPAPPDVIAGFVTRGKGVSIHRVNCKNFAEMSSHAPERVIQ 664 V++ G++G+ QLA CC+P P D I G + R +G++IH + C S P+R I Sbjct: 610 DPVVIYGSEGVAVQLAPCCQPIPGDAIIGQMKRDQGLTIHTLECDVARRQRSKEPDRWIG 669 Query: 665 TTWGAPARDTVYPVDIFVLASDRQGLLRDISDIFLRDKINVIGVSTQSVKGH--ARMAFT 722 TWGA + + I +LA + +G+L ++ N+ V K H + FT Sbjct: 670 VTWGA-GINRRFDCGITLLARNEKGILARVAAEIGESDANITHVGMDEDKEHMITYLHFT 728 Query: 723 AEIGSTEQLQKALTVIREVKGVIEAKRQ 750 ++ L + + +R + GV R Sbjct: 729 VQVEDRVHLARLMRNLRAIPGVTRLLRH 756 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.132 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,362,872 Number of extensions: 55826 Number of successful extensions: 180 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 172 Number of HSP's successfully gapped: 2 Length of query: 750 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 661 Effective length of database: 707,092 Effective search space: 467387812 Effective search space used: 467387812 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)