BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1832.p
         (116 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095008|ref|YP_001100083.1| hypothetical protein HEAR1803 [...   178   8e-47

>gi|134095008|ref|YP_001100083.1| hypothetical protein HEAR1803
           [Herminiimonas arsenicoxydans]
          Length = 116

 Score =  178 bits (451), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 83/116 (71%), Positives = 95/116 (81%)

Query: 1   MSVQRLHVGKRLSEVAIHNGTVYLAGQIAEDATQNIEGQTREVLGHIDRLLAEAGSDKTK 60
           M++ RLH+G  LSEVAIHNGTVYLAGQIAED TQNI+ QTREVLGHIDRLLAEAGSDKT+
Sbjct: 1   MNITRLHIGDTLSEVAIHNGTVYLAGQIAEDTTQNIQDQTREVLGHIDRLLAEAGSDKTR 60

Query: 61  ILSCQIFLSDVKDFAGMNAVWDEWVAPGNAPPRATVEAKLARPELLVEIIIVAAQK 116
           ILSCQIF++D  DF GMNA W+EWV  G+APPRATV  +      L+EII+VAA  
Sbjct: 61  ILSCQIFIADSNDFDGMNAAWNEWVPEGHAPPRATVAVQFPDSRRLIEIIVVAASS 116


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 220,734
Number of extensions: 8244
Number of successful extensions: 24
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 1,000,347
Length adjustment: 70
Effective length of query: 46
Effective length of database: 769,697
Effective search space: 35406062
Effective search space used: 35406062
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)